Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 CROT-204ENST00000442291 1993 ntTSL 5 BASIC2.48□□□□□ -2.01
HSPG2P98160 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 AC010401.2-201ENST00000575137 4934 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC2.48□□□□□ -2.01
HSPG2P98160 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC2.48□□□□□ -2.01
HSPG2P98160 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 UBE2V1P2-201ENST00000397758 440 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 CYCSP4-201ENST00000429682 331 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 AC073063.1-201ENST00000434352 607 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 AC127537.2-201ENST00000439258 465 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 RN7SL807P-201ENST00000470923 297 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 RPS3AP14-201ENST00000483907 780 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC2.48□□□□□ -2.01
HSPG2P98160 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 AC135507.2-201ENST00000612443 309 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 AL136164.3-201ENST00000624429 3978 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC2.48□□□□□ -2.01
HSPG2P98160 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC2.48□□□□□ -2.01
HSPG2P98160 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC2.48□□□□□ -2.01
HSPG2P98160 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HSPG2P98160 AL356274.2-201ENST00000624379 3752 ntBASIC2.48□□□□□ -2.01
HSPG2P98160 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 RPL21P91-201ENST00000429231 479 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AC108145.1-201ENST00000503770 153 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 RERGL-202ENST00000536890 367 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC2.47□□□□□ -2.01
HSPG2P98160 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 RPL12P50-201ENST00000603116 116 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 SCARNA15-201ENST00000607520 4325 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HSPG2P98160 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 SNORA3C-201ENST00000408792 125 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
HSPG2P98160 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 RN7SL809P-201ENST00000482040 297 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 BNIP3P41-201ENST00000503774 571 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 Vault.1-201ENST00000516474 102 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.47□□□□□ -2.01
HSPG2P98160 NPM1P47-201ENST00000560843 856 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AC091178.1-203ENST00000584586 279 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC2.47□□□□□ -2.01
HSPG2P98160 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 USP9YP36-201ENST00000424581 829 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 USP9YP31-201ENST00000431405 881 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 FCF1P7-201ENST00000451185 558 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 OSBPL9P1-201ENST00000604744 1469 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 SNORA5.1-201ENST00000384275 131 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 AC010285.3-201ENST00000511668 676 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC2.47□□□□□ -2.01
HSPG2P98160 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.47□□□□□ -2.01
HSPG2P98160 CYCSP40-201ENST00000575927 294 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 AL137849.1-201ENST00000604767 169 ntBASIC2.47□□□□□ -2.01
HSPG2P98160 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC2.47□□□□□ -2.01
HSPG2P98160 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HSPG2P98160 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms