Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL5A1P20908 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL5A1P20908 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
COL5A1P20908 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL5A1P20908 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
COL5A1P20908 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL5A1P20908 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 USP9YP4-201ENST00000424401 1745 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 SNORA73.2-201ENST00000364946 201 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 OR5BE1P-201ENST00000425977 939 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 DYNLL1P7-201ENST00000429273 258 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 SKP1P3-201ENST00000429280 487 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC104978.1-201ENST00000449387 391 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC090151.1-201ENST00000520784 730 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC100770.1-201ENST00000532310 322 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 RPL21P7-201ENST00000557463 483 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.05□□□□□ -1.76
COL5A1P20908 MIR5685-201ENST00000579080 79 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC008759.1-201ENST00000589783 983 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 LSM1P2-201ENST00000604911 322 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.05□□□□□ -1.76
COL5A1P20908 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 OR5BE1P-202ENST00000641168 1176 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.05□□□□□ -1.76
COL5A1P20908 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.05□□□□□ -1.76
COL5A1P20908 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 AP001157.1-201ENST00000550837 2339 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 MIR218-2-201ENST00000385006 110 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 RNA5SP360-201ENST00000516555 118 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC026403.1-201ENST00000518938 295 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A1P20908 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A1P20908 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A1P20908 AC006363.1-201ENST00000603806 463 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 OR51C1P-201ENST00000608504 942 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 AC015967.1-201ENST00000619893 476 ntBASIC4.05□□□□□ -1.76
COL5A1P20908 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A1P20908 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A1P20908 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
COL5A1P20908 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.04□□□□□ -1.76
COL5A1P20908 TCP1P3-201ENST00000414406 1498 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 HSPD1P14-201ENST00000432666 1618 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.04□□□□□ -1.76
COL5A1P20908 AL356968.2-201ENST00000412769 1257 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A1P20908 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A1P20908 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A1P20908 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 AC112230.1-201ENST00000604342 547 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A1P20908 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 AL672167.1-203ENST00000641299 2975 ntBASIC4.04□□□□□ -1.76
COL5A1P20908 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A1P20908 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A1P20908 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AP001273.1-201ENST00000624493 3152 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AC067945.1-201ENST00000342609 618 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 MIR200C-201ENST00000384980 68 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 MIR195-201ENST00000385194 87 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 Z92545.1-201ENST00000411782 234 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 HSPE1P12-201ENST00000412576 301 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 AL450992.3-201ENST00000413192 568 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms