Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 GTF2IP5-201ENST00000414608 731 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 SLC25A18P1-201ENST00000449385 454 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL096803.2-201ENST00000450032 677 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 OR52J1P-201ENST00000450596 932 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC092324.1-201ENST00000468671 324 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 GAPDHP56-201ENST00000506031 988 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 RNU5A-7P-201ENST00000515979 116 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 HMGB1P23-201ENST00000518743 568 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC084757.1-201ENST00000559987 490 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC090515.3-201ENST00000560431 315 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 BGLT3-201ENST00000564523 994 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC233702.9-201ENST00000581528 203 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 MIR4480-201ENST00000582492 71 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC090312.2-201ENST00000582687 378 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 EIF1P6-201ENST00000600054 334 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 NTAN1P1-201ENST00000603150 646 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 ABI1P1-201ENST00000603375 1120 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC116651.1-201ENST00000609724 556 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 MIR8069-1-201ENST00000616627 86 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC078880.5-201ENST00000617845 421 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL109620.1-201ENST00000618738 1197 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL669942.2-201ENST00000620352 697 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 MIR8069-2-201ENST00000621412 86 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC091953.3-201ENST00000623220 236 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL590396.2-201ENST00000636511 1041 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 DDX18P3-201ENST00000404856 2007 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AL136520.1-201ENST00000600311 1322 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 OR4K17-201ENST00000315543 1032 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 RN7SKP247-201ENST00000411094 308 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AL360081.1-201ENST00000428299 555 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC073052.1-201ENST00000440417 714 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC063943.1-201ENST00000465434 453 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 RN7SL591P-201ENST00000496150 292 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC112206.4-201ENST00000515142 405 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 RN7SKP46-201ENST00000515942 234 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 MORF4L1P3-201ENST00000525966 950 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC063949.1-201ENST00000552900 865 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 DPRXP4-201ENST00000578053 568 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AP003117.1-201ENST00000602771 554 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC020910.3-201ENST00000603701 874 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC005014.3-201ENST00000605985 190 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC008759.3-201ENST00000613300 508 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AC023509.5-201ENST00000617434 807 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 AP003400.6-201ENST00000624698 740 ntBASIC5.03□□□□□ -1.6
VPS28Q9UK41 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS28Q9UK41 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS28Q9UK41 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.61
VPS28Q9UK41 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms