Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 AC003985.2-201ENST00000562268 1669 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 TMSB4XP4-201ENST00000323496 618 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MIR130B-202ENST00000385018 82 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MT-TD-201ENST00000387419 68 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RNU6-932P-201ENST00000391108 106 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MIR1275-201ENST00000408770 80 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RNA5SP431-201ENST00000410312 120 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 GLRXP1-201ENST00000423261 334 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 USP9YP9-201ENST00000429406 715 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RPS27P5-201ENST00000444247 244 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 CFL1P4-201ENST00000451536 498 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC023194.2-201ENST00000465398 406 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RPL38P3-201ENST00000484463 213 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL117692.1-201ENST00000494283 713 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RFPL4AP3-201ENST00000515267 345 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 HNRNPKP5-201ENST00000515300 253 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MIR2117-201ENST00000516780 80 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 IGKV3D-25-201ENST00000519599 235 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC022832.1-201ENST00000530718 645 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL121594.2-201ENST00000541658 472 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 BPTFP1-201ENST00000579209 492 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC090236.2-201ENST00000587933 1101 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL022154.1-201ENST00000604698 785 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC018714.1-201ENST00000605028 208 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL392112.1-201ENST00000605115 829 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC092354.1-201ENST00000606057 376 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL136131.3-201ENST00000607600 188 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AP001437.1-201ENST00000608783 456 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AC139769.3-201ENST00000618383 175 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL136228.1-201ENST00000622221 319 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 CR381653.2-201ENST00000624041 768 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AL683826.1-201ENST00000624104 627 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 MIR3688-2-201ENST00000636963 87 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 AP000776.1-201ENST00000530032 1663 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 GVINP1-202ENST00000531871 7271 ntBASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC39Q9UFE4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 Y_RNA.38-201ENST00000362617 102 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 RNU1-87P-201ENST00000363727 170 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 RNY3P10-201ENST00000384764 102 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 RNU6-876P-201ENST00000391295 104 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 PAICSP7-201ENST00000419829 962 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 RPL21P32-201ENST00000419877 477 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 MTCYBP24-201ENST00000420387 1106 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL513174.1-201ENST00000423182 629 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 NDUFA5P4-201ENST00000436704 385 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC096775.1-201ENST00000437724 448 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 ATP5LP2-201ENST00000440646 311 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AC023141.8-201ENST00000442554 208 ntBASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC39Q9UFE4 YRDCP3-201ENST00000456507 480 ntBASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms