Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AL033523.1-201ENST00000605153 153 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 AC013412.1-201ENST00000610687 192 ntBASIC3.93□□□□□ -1.78
VPS13AQ96RL7 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS13AQ96RL7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AP000432.2-201ENST00000624164 2048 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC093719.1-202ENST00000392735 373 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC110801.1-201ENST00000623590 212 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 ATE1-AS1-202ENST00000636460 506 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AL731532.2-201ENST00000623542 1953 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC092111.2-201ENST00000611627 1414 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AL035423.1-201ENST00000420331 213 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 EIF1P3-201ENST00000423841 334 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 USP9YP36-201ENST00000424581 829 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 HNRNPA1P29-201ENST00000426409 879 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 USP9YP31-201ENST00000431405 881 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 RN7SL807P-201ENST00000470923 297 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 AP000648.2-201ENST00000624182 404 ntBASIC3.92□□□□□ -1.78
VPS13AQ96RL7 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS13AQ96RL7 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC068254.2-201ENST00000623938 3577 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 VPS35P1-201ENST00000563400 1518 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 HMGB3P19-201ENST00000403971 560 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC005326.1-201ENST00000429197 123 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 DNM1P47-203ENST00000571780 12667 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AL360270.2-201ENST00000562952 5985 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC025750.2-201ENST00000442609 450 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AC018635.1-201ENST00000468292 1030 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 CYCSP40-201ENST00000575927 294 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AL031666.3-201ENST00000609320 1006 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS13AQ96RL7 AP001642.1-201ENST00000624727 2117 ntBASIC3.91□□□□□ -1.78
VPS13AQ96RL7 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 SNORA60-201ENST00000362396 134 ntBASIC3.9□□□□□ -1.78
VPS13AQ96RL7 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC010486.1-201ENST00000511793 424 ntBASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC006504.3-201ENST00000586818 523 ntBASIC3.9□□□□□ -1.78
VPS13AQ96RL7 AC125494.3-201ENST00000602759 455 ntBASIC3.9□□□□□ -1.78
VPS13AQ96RL7 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
VPS13AQ96RL7 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AP003175.1-201ENST00000641383 6658 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms