Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC005294.1-201ENST00000355509 281 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 SNORD116-1-201ENST00000384335 95 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 SNORA70-201ENST00000384436 135 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 RNA5SP339-201ENST00000390987 122 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 SNORA48.4-201ENST00000391089 134 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 HSPA8P15-201ENST00000401676 786 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 RNA5SP487-201ENST00000410186 122 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC007394.1-201ENST00000421941 531 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AL365203.2-201ENST00000423444 196 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 HMGN2P27-201ENST00000427352 270 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 HSPD1P12-201ENST00000429127 1069 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 MTCO1P3-201ENST00000429327 192 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC090018.1-201ENST00000434369 367 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 EEF1B2P5-201ENST00000444820 548 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AL035551.1-201ENST00000446931 348 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 CBX1P2-201ENST00000453841 458 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 RPL32P9-201ENST00000487963 407 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC022133.1-201ENST00000490961 571 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 RPL15P21-201ENST00000495592 567 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AL035404.1-201ENST00000497982 568 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC022360.1-201ENST00000521058 340 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 HMGB1P40-201ENST00000525121 540 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 HAUS8P1-201ENST00000549005 542 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 BNIP3P26-201ENST00000600827 554 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC011453.2-201ENST00000603737 729 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AL022394.1-201ENST00000606979 292 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AP005137.2-201ENST00000609238 400 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC022509.4-201ENST00000621404 572 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC007671.2-201ENST00000637344 619 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 AC046144.1-201ENST00000478559 1853 ntBASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTCHD3Q3KNS1 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RSL24D1P4-201ENST00000400938 484 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 MIR1303-201ENST00000408625 86 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 BX119904.4-201ENST00000424402 301 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL009174.1-201ENST00000426577 416 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 NPM1P22-201ENST00000427761 952 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL136231.1-201ENST00000429407 730 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 OR52B5P-201ENST00000435337 951 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RPS18P6-201ENST00000476880 458 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 AC090114.3-201ENST00000479267 829 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RPS21P4-201ENST00000487122 248 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 RPF2P2-201ENST00000504693 896 ntBASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTCHD3Q3KNS1 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms