Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL118522.2-201ENST00000616045 615 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 YES1P1-201ENST00000418510 1628 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.28□□□□□ -1.73
HOXA1P49639 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 USP9YP4-201ENST00000424401 1745 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 METTL21EP-201ENST00000298105 713 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 ANKRD36P1-201ENST00000344424 659 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 RNU1-108P-201ENST00000362556 161 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXA1P49639 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 AL603766.1-201ENST00000407763 664 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 RN7SKP278-201ENST00000410504 342 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 RPS24P7-201ENST00000416921 246 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AL356320.2-201ENST00000417263 507 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 ATP5A1P8-201ENST00000423669 1291 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 CDY14P-201ENST00000431260 1014 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC110602.1-201ENST00000437414 318 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 DNAJA1P5-201ENST00000440278 943 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC073052.1-201ENST00000440417 714 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 CDY12P-201ENST00000440679 1015 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 CDY13P-201ENST00000445813 1015 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 RPL31P44-201ENST00000447680 377 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 CDY23P-201ENST00000451661 1014 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 CDC42P1-201ENST00000456658 548 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA1P49639 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC011037.1-201ENST00000483964 558 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 PRELID3BP4-201ENST00000515476 571 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 RNA5SP473-201ENST00000516402 125 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 HMGB1P23-201ENST00000518743 568 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC018442.3-201ENST00000523025 183 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA1P49639 GNG2-208ENST00000554875 430 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC095057.3-201ENST00000567102 1157 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 OR1F2P-201ENST00000570470 933 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC022884.3-201ENST00000579571 248 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC061975.8-201ENST00000587058 721 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA1P49639 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC067773.1-201ENST00000603284 1094 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC092954.1-201ENST00000609121 445 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC004948.1-201ENST00000609858 672 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 AC024257.5-201ENST00000612739 531 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA1P49639 AC087190.4-201ENST00000574616 8334 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
HOXA1P49639 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 AC073055.1-201ENST00000456901 1621 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 IFIT1P1-201ENST00000400497 1449 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA1P49639 AC005261.4-201ENST00000600047 1385 ntBASIC4.27□□□□□ -1.73
HOXA1P49639 SMG1P6-201ENST00000532337 2930 ntBASIC4.26□□□□□ -1.73
HOXA1P49639 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA1P49639 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
HOXA1P49639 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA1P49639 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 OR52B3P-201ENST00000314715 928 ntBASIC4.26□□□□□ -1.73
HOXA1P49639 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 RNU4-51P-201ENST00000364206 140 ntBASIC4.26□□□□□ -1.73
HOXA1P49639 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA1P49639 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA1P49639 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms