Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PRPF38AP2-201ENST00000438179 851 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC069540.1-201ENST00000446320 988 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC000111.2-201ENST00000448200 210 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC112206.1-201ENST00000468416 477 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC020890.1-201ENST00000491837 504 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.72□□□□□ -1.65
HNF4AP41235 ARL4AP1-201ENST00000503220 705 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.72□□□□□ -1.65
HNF4AP41235 OR5H4P-201ENST00000510851 923 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.72□□□□□ -1.65
HNF4AP41235 CIR1P1-201ENST00000524055 1133 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.72□□□□□ -1.65
HNF4AP41235 AC067852.4-201ENST00000590314 478 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC010680.3-201ENST00000604215 520 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AL158211.2-201ENST00000607282 395 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AL512506.1-201ENST00000613918 449 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC245389.2-201ENST00000616023 576 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 MIR8069-1-201ENST00000616627 86 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC243756.2-201ENST00000618406 463 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC242843.1-201ENST00000618702 573 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 MIR8069-2-201ENST00000621412 86 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC012414.7-202ENST00000622705 1090 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 AC091905.4-201ENST00000623432 202 ntBASIC4.72□□□□□ -1.65
HNF4AP41235 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.72□□□□□ -1.65
HNF4AP41235 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.72□□□□□ -1.65
HNF4AP41235 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
HNF4AP41235 DHX9P1-201ENST00000436565 3076 ntBASIC4.71□□□□□ -1.65
HNF4AP41235 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.71□□□□□ -1.65
HNF4AP41235 IRF5P1-201ENST00000504852 2164 ntBASIC4.71□□□□□ -1.65
HNF4AP41235 AC099654.2-201ENST00000433031 1980 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
HNF4AP41235 AL359922.3-201ENST00000624779 1670 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HNF4AP41235 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 SNORA74A-201ENST00000364089 198 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AL645927.1-201ENST00000396783 406 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 AL589647.1-201ENST00000402485 466 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 RNA5SP345-201ENST00000410646 108 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.71□□□□□ -1.66
HNF4AP41235 CHEK2P3-201ENST00000416118 248 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 EIF4HP2-201ENST00000424380 563 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 CKS1BP6-201ENST00000424932 240 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AC023347.2-201ENST00000433994 462 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 PSMD10P3-201ENST00000437000 448 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.71□□□□□ -1.66
HNF4AP41235 NDUFS5P3-201ENST00000450668 321 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AC090686.1-201ENST00000481577 749 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.71□□□□□ -1.66
HNF4AP41235 RPL32P9-201ENST00000487963 407 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 HMGB1P21-201ENST00000502313 581 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.71□□□□□ -1.66
HNF4AP41235 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.71□□□□□ -1.66
HNF4AP41235 COX6B1P6-201ENST00000522347 255 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.71□□□□□ -1.66
HNF4AP41235 AC090751.1-201ENST00000566966 267 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.71□□□□□ -1.66
HNF4AP41235 AC115621.1-201ENST00000604653 858 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AC105148.1-201ENST00000604961 409 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AC007390.2-201ENST00000606229 3803 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AL021707.7-201ENST00000607991 416 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AP001521.2-201ENST00000608772 546 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 MIR1264-201ENST00000616374 69 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 CR381572.2-201ENST00000624852 397 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.71□□□□□ -1.66
HNF4AP41235 ATE1-AS1-202ENST00000636460 506 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.71□□□□□ -1.66
HNF4AP41235 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
HNF4AP41235 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HNF4AP41235 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HNF4AP41235 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 CASC19-206ENST00000641028 1430 ntBASIC4.71□□□□□ -1.66
HNF4AP41235 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.71□□□□□ -1.66
HNF4AP41235 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HNF4AP41235 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HNF4AP41235 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HNF4AP41235 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HNF4AP41235 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.7□□□□□ -1.66
HNF4AP41235 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.7□□□□□ -1.66
HNF4AP41235 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HNF4AP41235 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HNF4AP41235 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.7□□□□□ -1.66
HNF4AP41235 RN7SKP95-201ENST00000362860 303 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HNF4AP41235 RNU6-1176P-201ENST00000390955 107 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 AL357515.1-201ENST00000402967 542 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 UBE2V1P15-201ENST00000407776 448 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.7□□□□□ -1.66
HNF4AP41235 TBCAP2-201ENST00000416175 326 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 AL451139.1-201ENST00000434718 346 ntBASIC4.7□□□□□ -1.66
HNF4AP41235 NMNAT1P2-201ENST00000435192 860 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms