Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC079168.2-201ENST00000453977 416 ntBASIC4.37□□□□□ -1.71
SOX3P41225 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 AC010326.1-201ENST00000462726 602 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AP000942.1-201ENST00000463969 747 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AC022795.1-201ENST00000473808 480 ntBASIC4.37□□□□□ -1.71
SOX3P41225 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AC025459.1-201ENST00000504072 156 ntBASIC4.37□□□□□ -1.71
SOX3P41225 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 HMGB1P19-201ENST00000517578 577 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 CIR1P1-201ENST00000524055 1133 ntBASIC4.37□□□□□ -1.71
SOX3P41225 OR5M2P-201ENST00000529003 936 ntBASIC4.37□□□□□ -1.71
SOX3P41225 OR5AN2P-201ENST00000534535 896 ntBASIC4.37□□□□□ -1.71
SOX3P41225 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.37□□□□□ -1.71
SOX3P41225 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.37□□□□□ -1.71
SOX3P41225 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.37□□□□□ -1.71
SOX3P41225 AC105148.1-201ENST00000604961 409 ntBASIC4.37□□□□□ -1.71
SOX3P41225 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.37□□□□□ -1.71
SOX3P41225 AC005156.1-201ENST00000613371 573 ntBASIC4.37□□□□□ -1.71
SOX3P41225 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.37□□□□□ -1.71
SOX3P41225 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.37□□□□□ -1.71
SOX3P41225 TTC39DP-201ENST00000416781 1688 ntBASIC4.37□□□□□ -1.71
SOX3P41225 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SOX3P41225 A2MP1-204ENST00000566278 4130 ntBASIC4.36□□□□□ -1.71
SOX3P41225 HSPA8P19-201ENST00000505359 1517 ntBASIC4.36□□□□□ -1.71
SOX3P41225 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.36□□□□□ -1.71
SOX3P41225 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 SNORA56-201ENST00000383966 129 ntBASIC4.36□□□□□ -1.71
SOX3P41225 MIR195-201ENST00000385194 87 ntBASIC4.36□□□□□ -1.71
SOX3P41225 MIR620-201ENST00000385232 95 ntBASIC4.36□□□□□ -1.71
SOX3P41225 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SOX3P41225 SNORA79B-201ENST00000410557 148 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AL591848.1-201ENST00000413092 322 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AL158825.1-201ENST00000414735 521 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC119751.6-201ENST00000416712 186 ntBASIC4.36□□□□□ -1.71
SOX3P41225 MTND2P15-201ENST00000418575 892 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC069213.2-201ENST00000420238 366 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AL354692.1-201ENST00000423044 315 ntBASIC4.36□□□□□ -1.71
SOX3P41225 OR6K4P-201ENST00000423179 955 ntBASIC4.36□□□□□ -1.71
SOX3P41225 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.36□□□□□ -1.71
SOX3P41225 AL359265.2-201ENST00000434367 631 ntBASIC4.36□□□□□ -1.71
SOX3P41225 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 CEACAMP9-201ENST00000442990 513 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC011753.3-201ENST00000443436 406 ntBASIC4.36□□□□□ -1.71
SOX3P41225 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 CYCSP20-201ENST00000473154 315 ntBASIC4.36□□□□□ -1.71
SOX3P41225 RPL21P6-201ENST00000479171 504 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC107398.1-201ENST00000486904 505 ntBASIC4.36□□□□□ -1.71
SOX3P41225 CAB39P1-201ENST00000502277 460 ntBASIC4.36□□□□□ -1.71
SOX3P41225 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.36□□□□□ -1.71
SOX3P41225 AC112518.2-201ENST00000508565 425 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 AC133963.2-201ENST00000513686 578 ntBASIC4.36□□□□□ -1.71
SOX3P41225 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 AP003355.1-201ENST00000518956 587 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 HIGD1AP18-201ENST00000520730 278 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 AC104229.1-201ENST00000561364 255 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.36□□□□□ -1.71
SOX3P41225 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.36□□□□□ -1.71
SOX3P41225 AC068790.7-201ENST00000602347 528 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC011458.1-201ENST00000604034 617 ntBASIC4.36□□□□□ -1.71
SOX3P41225 OR7A19P-201ENST00000608051 733 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AL391834.2-201ENST00000609982 546 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.36□□□□□ -1.71
SOX3P41225 AC140113.4-201ENST00000622087 222 ntBASIC4.36□□□□□ -1.71
SOX3P41225 AC021106.3-201ENST00000623925 531 ntBASIC4.36□□□□□ -1.71
SOX3P41225 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 AC008432.1-201ENST00000615912 1320 ntBASIC4.36□□□□□ -1.71
SOX3P41225 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.36□□□□□ -1.71
SOX3P41225 BTBD10P1-201ENST00000549824 1352 ntBASIC4.36□□□□□ -1.71
SOX3P41225 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SOX3P41225 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
SOX3P41225 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms