Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX2P35548 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX2P35548 RBPJP7-201ENST00000442803 1447 ntBASIC5.39□□□□□ -1.55
MSX2P35548 RBPJP5-201ENST00000449433 1447 ntBASIC5.39□□□□□ -1.55
MSX2P35548 RBPJP2-201ENST00000618187 1444 ntBASIC5.39□□□□□ -1.55
MSX2P35548 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
MSX2P35548 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
MSX2P35548 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 OR4F13P-202ENST00000560066 2054 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.38□□□□□ -1.55
MSX2P35548 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 RNY4P24-201ENST00000362735 96 ntBASIC5.38□□□□□ -1.55
MSX2P35548 RNU6-621P-201ENST00000364752 109 ntBASIC5.38□□□□□ -1.55
MSX2P35548 RNA5SP279-201ENST00000365513 117 ntBASIC5.38□□□□□ -1.55
MSX2P35548 RNY3P10-201ENST00000384764 102 ntBASIC5.38□□□□□ -1.55
MSX2P35548 MIR130A-201ENST00000385274 89 ntBASIC5.38□□□□□ -1.55
MSX2P35548 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
MSX2P35548 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX2P35548 AC013404.1-201ENST00000413068 249 ntBASIC5.38□□□□□ -1.55
MSX2P35548 TPT1P2-201ENST00000413105 503 ntBASIC5.38□□□□□ -1.55
MSX2P35548 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 VN1R20P-201ENST00000425215 966 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC091862.1-201ENST00000438016 1100 ntBASIC5.38□□□□□ -1.55
MSX2P35548 CACYBPP1-201ENST00000438592 684 ntBASIC5.38□□□□□ -1.55
MSX2P35548 USP9YP22-201ENST00000438971 294 ntBASIC5.38□□□□□ -1.55
MSX2P35548 ELOCP10-201ENST00000440624 327 ntBASIC5.38□□□□□ -1.55
MSX2P35548 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.38□□□□□ -1.55
MSX2P35548 RPS10P18-201ENST00000442662 495 ntBASIC5.38□□□□□ -1.55
MSX2P35548 BMS1P10-201ENST00000443754 1120 ntBASIC5.38□□□□□ -1.55
MSX2P35548 TRIM60P16-201ENST00000444048 694 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC234771.2-201ENST00000445718 597 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC003071.1-201ENST00000451219 789 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL358876.1-201ENST00000453364 1075 ntBASIC5.38□□□□□ -1.55
MSX2P35548 RFC5P1-201ENST00000454419 874 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC021205.1-201ENST00000468797 348 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AP003385.3-201ENST00000472498 287 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC072039.1-201ENST00000477611 581 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC098818.1-201ENST00000478593 252 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX2P35548 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC006499.5-201ENST00000505037 514 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX2P35548 AC025881.1-201ENST00000518851 512 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC116917.1-201ENST00000520558 305 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC083923.1-201ENST00000523708 376 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AP000859.1-201ENST00000525536 307 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC122688.1-201ENST00000541494 223 ntBASIC5.38□□□□□ -1.55
MSX2P35548 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.38□□□□□ -1.55
MSX2P35548 ADI1P3-201ENST00000549509 470 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.38□□□□□ -1.55
MSX2P35548 MIR3157-201ENST00000578688 85 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX2P35548 MIR4660-201ENST00000583549 74 ntBASIC5.38□□□□□ -1.55
MSX2P35548 ELOCP34-201ENST00000604436 327 ntBASIC5.38□□□□□ -1.55
MSX2P35548 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.38□□□□□ -1.55
MSX2P35548 NANOGP3-201ENST00000605855 286 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC004067.1-201ENST00000608733 700 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.38□□□□□ -1.55
MSX2P35548 AL139124.1-201ENST00000609123 421 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL357080.1-201ENST00000617394 239 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX2P35548 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX2P35548 AC073488.3-201ENST00000631611 778 ntBASIC5.38□□□□□ -1.55
MSX2P35548 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.38□□□□□ -1.55
MSX2P35548 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 AC079097.1-201ENST00000512187 1399 ntBASIC5.38□□□□□ -1.55
MSX2P35548 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.38□□□□□ -1.55
MSX2P35548 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 AL450345.1-202ENST00000605741 3881 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AC012254.3-201ENST00000591183 2117 ntBASIC5.38□□□□□ -1.55
MSX2P35548 AL353743.4-201ENST00000422653 1547 ntBASIC5.38□□□□□ -1.55
MSX2P35548 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.38□□□□□ -1.55
MSX2P35548 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
MSX2P35548 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX2P35548 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC092681.1-201ENST00000297369 291 ntBASIC5.37□□□□□ -1.55
MSX2P35548 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 RNU4-91P-201ENST00000364778 135 ntBASIC5.37□□□□□ -1.55
MSX2P35548 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 Y_RNA.408-201ENST00000383987 102 ntBASIC5.37□□□□□ -1.55
MSX2P35548 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms