Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.63□□□□□ -1.67
PTPN4P29074 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PTPN4P29074 SNORA27.3-201ENST00000364937 134 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 RNU6-532P-201ENST00000384318 107 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 RNU6-883P-201ENST00000384597 107 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.63□□□□□ -1.67
PTPN4P29074 NRBF2P3-201ENST00000432731 865 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AL359265.2-201ENST00000434367 631 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 AL157827.1-201ENST00000447622 132 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AC000111.2-201ENST00000448200 210 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 MTND3P4-201ENST00000453537 303 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.63□□□□□ -1.67
PTPN4P29074 AC116562.1-201ENST00000485355 781 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 AC010627.1-201ENST00000503819 1294 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AC008694.2-201ENST00000517591 306 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
PTPN4P29074 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.63□□□□□ -1.67
PTPN4P29074 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.63□□□□□ -1.67
PTPN4P29074 HMGB2P1-201ENST00000591146 634 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AL133247.2-201ENST00000603236 482 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 AC010200.2-201ENST00000605098 235 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.63□□□□□ -1.67
PTPN4P29074 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.63□□□□□ -1.67
PTPN4P29074 CR381572.2-201ENST00000624852 397 ntBASIC4.63□□□□□ -1.67
PTPN4P29074 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PTPN4P29074 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.63□□□□□ -1.67
PTPN4P29074 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.62□□□□□ -1.67
PTPN4P29074 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.62□□□□□ -1.67
PTPN4P29074 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PTPN4P29074 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PTPN4P29074 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 MIR421-201ENST00000365696 85 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 MIR93-201ENST00000385024 80 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AL357515.1-201ENST00000402967 542 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.62□□□□□ -1.67
PTPN4P29074 BX510359.2-201ENST00000417920 305 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AC068287.1-201ENST00000430283 295 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.62□□□□□ -1.67
PTPN4P29074 AC245517.2-201ENST00000442890 346 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AL353898.1-201ENST00000444055 238 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 RPL7P33-201ENST00000444159 742 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.62□□□□□ -1.67
PTPN4P29074 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
PTPN4P29074 RPL23AP56-201ENST00000460778 453 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 RN7SL354P-201ENST00000469282 294 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 NDUFA5P9-201ENST00000472609 340 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.62□□□□□ -1.67
PTPN4P29074 AC090543.1-201ENST00000492168 485 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 SOX5P1-201ENST00000524155 1127 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.62□□□□□ -1.67
PTPN4P29074 SS18L2P2-201ENST00000583960 235 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.62□□□□□ -1.67
PTPN4P29074 KATNBL1P1-201ENST00000605192 748 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AL023583.1-201ENST00000607518 1143 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.62□□□□□ -1.67
PTPN4P29074 LINC00216-201ENST00000623548 1126 ntBASIC4.62□□□□□ -1.67
PTPN4P29074 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.62□□□□□ -1.67
PTPN4P29074 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTPN4P29074 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.62□□□□□ -1.67
PTPN4P29074 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.61□□□□□ -1.67
PTPN4P29074 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.61□□□□□ -1.67
PTPN4P29074 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
PTPN4P29074 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.61□□□□□ -1.67
PTPN4P29074 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 RHOT1P2-201ENST00000366423 333 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTPN4P29074 RNA5SP345-201ENST00000410646 108 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 RNA5SP104-201ENST00000410989 118 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 AC114755.2-201ENST00000413520 361 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 AC073464.3-201ENST00000422564 712 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 SKP1P3-201ENST00000429280 487 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 RPL36AP15-201ENST00000444514 266 ntBASIC4.61□□□□□ -1.67
PTPN4P29074 AC010326.1-201ENST00000462726 602 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms