Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMARCA1P28370 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SMARCA1P28370 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMARCA1P28370 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 CCT8P1-201ENST00000413611 1657 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC005005.4-201ENST00000623789 16698 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 RN7SKP95-201ENST00000362860 303 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SMARCA1P28370 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 LRRC37BP1-201ENST00000398851 714 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 MTCO1P56-201ENST00000401674 224 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AL049545.1-201ENST00000401856 572 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC007394.1-201ENST00000421941 531 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 MTND5P25-201ENST00000430499 799 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 NANOGP2-201ENST00000435391 727 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 SETD6P1-201ENST00000444575 317 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 RNU7-27P-201ENST00000459281 62 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AC005410.1-202ENST00000460347 485 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AC231760.1-201ENST00000498002 260 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC119751.1-201ENST00000513357 765 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AC092593.2-201ENST00000513866 913 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC091515.1-201ENST00000548110 679 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.79□□□□□ -1.48
SMARCA1P28370 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC5.79□□□□□ -1.48
SMARCA1P28370 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 U6.48-201ENST00000618523 106 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AP002967.1-201ENST00000624203 539 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 AL121594.5-201ENST00000631724 573 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 ECM1P2-201ENST00000503354 1577 ntBASIC5.79□□□□□ -1.48
SMARCA1P28370 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.79□□□□□ -1.48
SMARCA1P28370 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
SMARCA1P28370 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SMARCA1P28370 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMARCA1P28370 AL138820.1-201ENST00000617901 5305 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SMARCA1P28370 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.78□□□□□ -1.48
SMARCA1P28370 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.78□□□□□ -1.48
SMARCA1P28370 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SMARCA1P28370 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SMARCA1P28370 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SMARCA1P28370 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SMARCA1P28370 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 RNU6-543P-201ENST00000362576 108 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 RNA5SP123-201ENST00000363244 119 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SMARCA1P28370 AC013442.1-201ENST00000397347 228 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.78□□□□□ -1.48
SMARCA1P28370 RN7SKP16-201ENST00000410180 299 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 RN7SKP125-201ENST00000410481 302 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 AC013404.1-201ENST00000413068 249 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.78□□□□□ -1.48
SMARCA1P28370 AC007738.1-201ENST00000413892 348 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.78□□□□□ -1.48
SMARCA1P28370 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.78□□□□□ -1.48
SMARCA1P28370 HIGD1AP4-201ENST00000430194 280 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 RPS6P15-201ENST00000431996 751 ntBASIC5.78□□□□□ -1.48
SMARCA1P28370 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.78□□□□□ -1.48
SMARCA1P28370 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.78□□□□□ -1.48
SMARCA1P28370 RPL7P11-201ENST00000437586 658 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms