Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC133473.1-201ENST00000455173 299 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC027338.1-201ENST00000514840 825 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 OR4V1P-201ENST00000525394 1140 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC027176.2-201ENST00000559166 746 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 SNX6P1-201ENST00000601728 1224 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 HMGB1P51-201ENST00000605166 638 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL450270.1-201ENST00000606160 391 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL139022.2-201ENST00000606934 443 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC019131.2-201ENST00000609071 870 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL359757.1-201ENST00000623176 255 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXD4P09016 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 SCN1A-220ENST00000641603 12506 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL132640.2-201ENST00000559968 1698 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXD4P09016 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 MAPK10-303ENST00000641324 3959 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXD4P09016 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXD4P09016 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXD4P09016 RNA5SP372-201ENST00000390836 115 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 U3.30-201ENST00000391308 210 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AL357515.1-201ENST00000402967 542 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 HDGFP1-201ENST00000405943 252 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 PTGES3P2-201ENST00000407942 482 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 QRSL1P2-201ENST00000418582 964 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXD4P09016 RPS17P8-201ENST00000434525 335 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 ARL5AP3-201ENST00000439327 386 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC000111.2-201ENST00000448200 210 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 BUD31P2-201ENST00000449374 300 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXD4P09016 AC093166.2-201ENST00000455969 1017 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 AP002345.1-201ENST00000456493 928 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 RPL5P30-201ENST00000465511 891 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 LARP7P4-201ENST00000481075 878 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC020890.1-201ENST00000491837 504 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 RN7SL558P-201ENST00000497468 299 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXD4P09016 VWA8P1-201ENST00000510889 176 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXD4P09016 RNA5SP249-201ENST00000516127 99 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXD4P09016 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC092868.3-201ENST00000560515 784 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 RN7SL802P-201ENST00000577858 299 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 MIR4715-201ENST00000584117 79 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXD4P09016 DNAJC19P3-201ENST00000594491 331 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC093765.1-201ENST00000603758 881 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC011458.1-201ENST00000604034 617 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC026368.1-201ENST00000614934 690 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AL133370.2-201ENST00000619934 439 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC007342.7-201ENST00000624610 2337 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXD4P09016 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXD4P09016 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
HOXD4P09016 AC027290.2-201ENST00000623210 18662 ntBASIC4.3□□□□□ -1.72
HOXD4P09016 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXD4P09016 AC012020.1-201ENST00000624541 1728 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms