Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 RN7SKP27-201ENST00000410684 333 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 MTCO2P8-201ENST00000412213 658 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 RPL23AP26-201ENST00000412728 464 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 BX119904.4-201ENST00000424402 301 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 RN7SL303P-201ENST00000469773 251 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AC091167.1-201ENST00000492017 396 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 AL117351.2-201ENST00000513571 157 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC5.81□□□□□ -1.48
COL3A1P02461 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 AC027455.1-201ENST00000574104 594 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 HMGB2P1-201ENST00000591146 634 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 OR4H6P-202ENST00000603819 340 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 Z94722.1-201ENST00000604328 474 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AL450336.1-201ENST00000605180 586 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AC138473.1-201ENST00000605717 526 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 RDM1-219ENST00000615378 542 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 MIR7151-201ENST00000617477 60 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.81□□□□□ -1.48
COL3A1P02461 AC098679.4-201ENST00000624241 654 ntBASIC5.81□□□□□ -1.48
COL3A1P02461 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC5.81□□□□□ -1.48
COL3A1P02461 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL3A1P02461 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
COL3A1P02461 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL3A1P02461 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL3A1P02461 TCP11X1-202ENST00000622971 1372 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL3A1P02461 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL3A1P02461 RNU6-1000P-201ENST00000391066 106 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 AL357078.2-201ENST00000416486 427 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL3A1P02461 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 AC011998.1-201ENST00000433403 117 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 ELOCP11-201ENST00000436690 332 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 ELOCP16-201ENST00000444494 332 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 EEF1A1P1-201ENST00000447052 739 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.8□□□□□ -1.48
COL3A1P02461 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 IGKV2D-10-201ENST00000520194 281 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 MRPL49P2-201ENST00000521066 465 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 CYCSP29-201ENST00000533731 318 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 CYCSP28-201ENST00000534284 321 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.8□□□□□ -1.48
COL3A1P02461 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC5.8□□□□□ -1.48
COL3A1P02461 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC092140.2-201ENST00000618027 521 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 AC091905.2-201ENST00000623143 306 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AC004808.1-201ENST00000627671 721 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 MIR6830-201ENST00000636015 70 ntBASIC5.8□□□□□ -1.48
COL3A1P02461 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.8□□□□□ -1.48
COL3A1P02461 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL3A1P02461 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.8□□□□□ -1.48
COL3A1P02461 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.8□□□□□ -1.48
COL3A1P02461 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
COL3A1P02461 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL3A1P02461 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
COL3A1P02461 RNU1-20P-201ENST00000363314 162 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms