Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC135068.5-201ENST00000624197 983 ntBASIC5.14□□□□□ -1.59
VPS4AQ9UN37 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.14□□□□□ -1.59
VPS4AQ9UN37 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
VPS4AQ9UN37 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 HSPA8P18-201ENST00000439846 1928 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 NSRP1P1-201ENST00000444067 1693 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 RNA5SP183-201ENST00000362452 119 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 SNORD113-6-201ENST00000363345 75 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 CD2-201ENST00000369477 478 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 RNA5SP487-201ENST00000410186 122 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 CTSL3P-202ENST00000412179 788 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 TAF13P2-201ENST00000416876 286 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 Z75741.2-201ENST00000417272 1167 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 SRSF1P1-201ENST00000424058 520 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 GTF2IP2-201ENST00000424290 697 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 HSPD1P12-201ENST00000429127 1069 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 TXNL1P1-201ENST00000429528 554 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 RPL12P17-201ENST00000432393 498 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 CACYBPP1-201ENST00000438592 684 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC002542.1-201ENST00000440683 193 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC090804.1-201ENST00000448870 490 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC005410.1-202ENST00000460347 485 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC021205.1-201ENST00000468797 348 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 RPS29P22-201ENST00000472363 168 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC007686.1-201ENST00000488511 463 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 MTND6P2-201ENST00000512226 524 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 MTCO3P15-201ENST00000526563 574 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 OR4A2P-201ENST00000527276 913 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 EMP1-206ENST00000537612 505 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ZNF321P-202ENST00000550843 495 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC127381.1-201ENST00000555979 939 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC090695.1-201ENST00000561269 1222 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC023813.2-201ENST00000564321 469 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC007349.4-201ENST00000608114 532 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC244107.2-201ENST00000611773 76 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC091932.2-201ENST00000623014 291 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AP002799.1-201ENST00000623552 423 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 U6.107-201ENST00000637108 79 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 NEAT1-202ENST00000501122 22743 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC027228.2-201ENST00000567141 2154 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ZNF876P-202ENST00000398732 1485 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS4AQ9UN37 VPS35P1-201ENST00000563400 1518 ntBASIC5.13□□□□□ -1.59
VPS4AQ9UN37 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
VPS4AQ9UN37 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms