Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
TDP1Q9NUW8 AC133552.1-201ENST00000569988 4007 ntBASIC5.52□□□□□ -1.53
TDP1Q9NUW8 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC5.52□□□□□ -1.53
TDP1Q9NUW8 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.52□□□□□ -1.53
TDP1Q9NUW8 AC023421.1-201ENST00000590535 1785 ntBASIC5.52□□□□□ -1.53
TDP1Q9NUW8 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
TDP1Q9NUW8 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 ECM1P2-201ENST00000503354 1577 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 SGO1P1-201ENST00000603525 1447 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC103591.2-201ENST00000265259 766 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MIR585-201ENST00000384887 94 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MIR16-1-201ENST00000385271 89 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL109941.1-201ENST00000401925 229 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 HNRNPDP2-201ENST00000406475 478 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL445213.1-201ENST00000412589 747 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 NRBF2P2-201ENST00000413087 861 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 RBMY2KP-201ENST00000418221 992 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC004074.1-201ENST00000421810 1063 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL139421.1-201ENST00000423010 169 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 ATP5F1P1-201ENST00000433775 569 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL035551.1-201ENST00000446931 348 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC073387.1-201ENST00000453261 709 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL109741.2-201ENST00000455561 343 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL133244.1-201ENST00000456007 258 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MTND3P7-201ENST00000474435 343 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC098799.3-201ENST00000506095 438 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MTND1P22-201ENST00000510572 951 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 RNU6-232P-201ENST00000517144 64 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC020937.1-201ENST00000519677 1013 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MTCO1P49-201ENST00000523429 802 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AP001317.1-201ENST00000531194 960 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 OR1F2P-201ENST00000570470 933 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC124312.4-201ENST00000605533 310 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL049539.1-201ENST00000611964 459 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AL139418.1-201ENST00000613613 177 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC011939.3-201ENST00000613686 466 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC135068.5-201ENST00000624197 983 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 ELL2P3-201ENST00000457883 1602 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TDP1Q9NUW8 AC125336.1-201ENST00000508893 2827 ntBASIC5.51□□□□□ -1.53
TDP1Q9NUW8 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RBPJP2-201ENST00000618187 1444 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 PANDAR-201ENST00000629595 1506 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MIR600-201ENST00000385007 98 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 SNORD65.1-201ENST00000390889 71 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 SETP15-201ENST00000412724 337 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MTCO1P54-201ENST00000430139 712 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 USP9YP31-201ENST00000431405 881 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RPL21P110-201ENST00000433345 446 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL354941.1-201ENST00000438600 464 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RPS27AP8-201ENST00000452665 445 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL445669.2-201ENST00000454425 421 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MTND2P28-201ENST00000457540 1044 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 LINC00888-204ENST00000487386 421 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms