Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRIAP1P1-201ENST00000427062 225 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 B3GNT2P1-201ENST00000434960 952 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RAB9AP5-201ENST00000437794 597 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SUMO2P3-201ENST00000438311 288 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RAB9AP2-201ENST00000443911 597 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC090954.1-201ENST00000445502 361 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL035551.1-201ENST00000446931 348 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC098824.1-201ENST00000453565 980 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 PPIAP27-201ENST00000453800 265 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC018638.3-201ENST00000461273 132 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 PDPN-205ENST00000487038 607 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 TFP1-203ENST00000490470 561 ntTSL 4 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 EIF4E2P2-201ENST00000492033 736 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RN7SL445P-201ENST00000495609 293 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC114324.2-202ENST00000503812 134 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC109481.1-201ENST00000509173 282 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RN7SKP209-201ENST00000516888 304 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RNA5SP340-201ENST00000517132 107 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RN7SKP35-201ENST00000517210 151 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RAB2A-208ENST00000529579 680 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL078601.3-201ENST00000573303 535 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC100832.2-201ENST00000582080 776 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 MIR212-201ENST00000586026 110 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 TREM1-204ENST00000589614 772 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 VN1R84P-201ENST00000593697 235 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC069307.1-201ENST00000602820 447 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AL365400.2-201ENST00000605604 902 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 STARD13-AS-247ENST00000610879 779 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 OR5G5P-204ENST00000627642 621 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC008013.2-202ENST00000637965 364 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC010329.2-201ENST00000595195 2737 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 OR4A15-201ENST00000314706 1035 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 DYNLT3P1-201ENST00000378574 347 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL133270.1-201ENST00000402635 279 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL133325.1-201ENST00000421090 382 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL121776.1-201ENST00000429337 372 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 FTH1P1-201ENST00000437933 532 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL512326.1-201ENST00000443050 721 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL031681.1-201ENST00000443304 400 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL606804.1-202ENST00000446347 481 ntTSL 2 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC104763.1-201ENST00000475274 360 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 RPL29P23-201ENST00000486188 442 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC106806.2-201ENST00000509365 500 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 Vault.1-201ENST00000516474 102 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 RNA5SP438-201ENST00000516561 112 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 CSAG2-201ENST00000535353 237 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 OR4T1P-201ENST00000554933 911 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL109766.1-201ENST00000555080 552 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 OR4H12P-201ENST00000556269 907 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC002519.2-203ENST00000567043 837 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms