Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 RNU1-20P-201ENST00000363314 162 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 MIR218-2-201ENST00000385006 110 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC104306.1-201ENST00000449702 371 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC138938.1-201ENST00000515431 782 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 MFSD8-242ENST00000641690 4199 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AL133268.1-201ENST00000405676 1401 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 RPL12P18-201ENST00000437175 325 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 RPS4XP4-201ENST00000443195 763 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC090013.1-201ENST00000485147 480 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC010460.1-201ENST00000507087 466 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 RNU6-352P-201ENST00000516908 107 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC090912.3-201ENST00000609775 533 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 AC010608.2-201ENST00000624830 470 ntBASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC88AQ3V6T2 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AP001157.1-201ENST00000550837 2339 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 RPL23AP46-201ENST00000438548 490 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC112206.1-201ENST00000468416 477 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 NPM1P21-201ENST00000513394 762 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 DYNLL1P4-201ENST00000549314 266 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC107016.1-201ENST00000550463 337 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 VN1R92P-201ENST00000598511 928 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC025175.1-201ENST00000606482 759 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 AC097505.1-201ENST00000610199 565 ntBASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC88AQ3V6T2 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 CASC19-284ENST00000642142 1868 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 RPL5P32-201ENST00000454085 879 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 RPS4XP15-201ENST00000489210 795 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 DEFB109F-201ENST00000491870 277 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 IFITM8P-201ENST00000522529 394 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 AC027455.1-201ENST00000574104 594 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 AC110743.1-201ENST00000584870 478 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 FAM91A3P-201ENST00000456826 2544 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC88AQ3V6T2 RNU1-44P-201ENST00000384453 163 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC074250.1-201ENST00000511117 192 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms