Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PTPN4P29074 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
PTPN4P29074 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PTPN4P29074 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN4P29074 RNU6-666P-201ENST00000363499 107 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RNU1-32P-201ENST00000363937 159 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RNA5SP505-201ENST00000364748 108 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 MIR320B1-201ENST00000390209 79 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN4P29074 MIR298-201ENST00000401212 88 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RNA5SP498-201ENST00000411342 120 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RAB28P1-201ENST00000411517 641 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AC004074.1-201ENST00000421810 1063 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.65□□□□□ -1.67
PTPN4P29074 TRIM60P13-201ENST00000432350 1283 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 MRPS33P4-201ENST00000434892 317 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AC069285.2-201ENST00000440210 275 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AURKAPS2-201ENST00000454983 333 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AP002345.1-201ENST00000456493 928 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN4P29074 RN7SL459P-201ENST00000481078 302 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RPL23AP72-201ENST00000492447 435 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN4P29074 AC021146.7-201ENST00000509604 775 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 FABP5P6-201ENST00000510588 409 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 PPBPP1-201ENST00000510807 373 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.65□□□□□ -1.67
PTPN4P29074 AC108120.2-201ENST00000512973 294 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 RNU6-362P-201ENST00000516736 90 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.65□□□□□ -1.67
PTPN4P29074 IGLV3-26-201ENST00000520756 302 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 NPM1P6-201ENST00000521088 871 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AC008759.1-201ENST00000589783 983 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AC008745.1-201ENST00000604064 271 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 MIR378J-201ENST00000611988 109 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.65□□□□□ -1.67
PTPN4P29074 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN4P29074 AL158196.1-201ENST00000616786 434 ntBASIC4.65□□□□□ -1.67
PTPN4P29074 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.65□□□□□ -1.67
PTPN4P29074 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.65□□□□□ -1.67
PTPN4P29074 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
PTPN4P29074 OR14L1P-202ENST00000641545 3009 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC068254.2-201ENST00000623938 3577 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 AC087190.4-201ENST00000574616 8334 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
PTPN4P29074 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
PTPN4P29074 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 RPL26P37-201ENST00000411983 438 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 RPL7P57-201ENST00000423238 740 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 RPL12P34-201ENST00000424532 479 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 DNAJC19P7-201ENST00000428811 344 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 RPL12P28-201ENST00000430852 489 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.64□□□□□ -1.67
PTPN4P29074 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.64□□□□□ -1.67
PTPN4P29074 AC234781.3-201ENST00000452540 973 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 RNU7-27P-201ENST00000459281 62 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC098799.1-201ENST00000504752 800 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC113430.1-201ENST00000506872 718 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 PGBD4P4-201ENST00000509673 613 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.64□□□□□ -1.67
PTPN4P29074 RNA5SP446-201ENST00000515955 82 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 RNA5SP154-201ENST00000516193 111 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 RN7SKP276-201ENST00000516242 268 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AF186190.1-201ENST00000517470 480 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.64□□□□□ -1.67
PTPN4P29074 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 AC090151.1-201ENST00000520784 730 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.64□□□□□ -1.67
PTPN4P29074 AP001880.2-201ENST00000538233 448 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.64□□□□□ -1.67
PTPN4P29074 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.64□□□□□ -1.67
PTPN4P29074 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.64□□□□□ -1.67
PTPN4P29074 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 AC007423.1-201ENST00000605009 627 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 BX322635.1-201ENST00000605804 496 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.64□□□□□ -1.67
PTPN4P29074 AL353726.1-201ENST00000614041 1000 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC074276.2-201ENST00000619891 348 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 MIR7703-201ENST00000620784 77 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AC019206.1-201ENST00000621938 425 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.64□□□□□ -1.67
PTPN4P29074 BMS1P21-201ENST00000634565 365 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.64□□□□□ -1.67
PTPN4P29074 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.64□□□□□ -1.67
PTPN4P29074 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
PTPN4P29074 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTPN4P29074 MTND4P26-201ENST00000415971 1359 ntBASIC4.64□□□□□ -1.67
PTPN4P29074 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTPN4P29074 AC017002.4-201ENST00000604721 1525 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms