| MUC1 | P15941 | QSER1-201 | ENST00000399302 | 9335 nt | APPRIS P1 TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | PPP1R9A-202 | ENST00000340694 | 9689 nt | APPRIS P1 TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | FCHSD2-205 | ENST00000409853 | 1867 nt | TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CPHL1P-201 | ENST00000461341 | 3407 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ADAM7-202 | ENST00000380789 | 3358 nt | APPRIS ALT2 TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RN7SKP44-201 | ENST00000363602 | 316 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL589994.1-201 | ENST00000404962 | 340 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ZNF603P-201 | ENST00000405613 | 487 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | SCP2-205 | ENST00000408941 | 1298 nt | TSL 2 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | LINC00279-201 | ENST00000413486 | 473 nt | TSL 3 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC245028.1-201 | ENST00000423259 | 256 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | UBE2V2P1-201 | ENST00000434717 | 398 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC078993.1-203 | ENST00000435789 | 1037 nt | TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL355306.2-209 | ENST00000437803 | 357 nt | TSL 2 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RPS27AP15-201 | ENST00000447672 | 466 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RN7SL354P-201 | ENST00000469282 | 294 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RPS26P15-201 | ENST00000488067 | 348 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | STK26-205 | ENST00000496850 | 1186 nt | TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC006499.6-201 | ENST00000511169 | 607 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC010451.2-201 | ENST00000511514 | 545 nt | TSL 4 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RNA5SP446-201 | ENST00000515955 | 82 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RN7SKP92-201 | ENST00000517266 | 244 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | LINC01609-202 | ENST00000522778 | 566 nt | TSL 2 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | OSGEPL1-AS1-203 | ENST00000523895 | 567 nt | TSL 4 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | TEX12-202 | ENST00000530752 | 787 nt | APPRIS P1 TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AP001781.1-201 | ENST00000530977 | 207 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC004801.3-201 | ENST00000547602 | 962 nt | TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC016526.2-201 | ENST00000554225 | 520 nt | TSL 3 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | PSMA3-213 | ENST00000557508 | 814 nt | TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CD24P2-201 | ENST00000565486 | 219 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ZNF540-204 | ENST00000586792 | 564 nt | TSL 3 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC015911.5-201 | ENST00000587076 | 451 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC234771.5-201 | ENST00000600161 | 514 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC006065.6-201 | ENST00000625201 | 545 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC012593.1-212 | ENST00000627058 | 580 nt | TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | EYA4-202 | ENST00000355286 | 4317 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | C9orf72-203 | ENST00000380003 | 3200 nt | APPRIS P1 TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | FAM35DP-201 | ENST00000323387 | 2712 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | MTND5P23-201 | ENST00000430812 | 1655 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL592148.3-201 | ENST00000608771 | 2646 nt | BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | SCAI-201 | ENST00000336505 | 12079 nt | APPRIS P1 TSL 1 (best) BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | FAM169A-203 | ENST00000510496 | 5810 nt | TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | WDR72-204 | ENST00000559418 | 3602 nt | TSL 5 BASIC | 3.8 | □□□□□ -1.8 | | |
| MUC1 | P15941 | SYCP1-210 | ENST00000618516 | 3109 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | SLC10A2-201 | ENST00000245312 | 3779 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CCNT2-201 | ENST00000264157 | 6917 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | MALRD1-204 | ENST00000454679 | 6880 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC007342.9-201 | ENST00000623877 | 1385 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | NLGN1-201 | ENST00000361589 | 5092 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | WDR89-201 | ENST00000267522 | 1687 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RIMS1-204 | ENST00000401910 | 3542 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ARHGAP21-218 | ENST00000636789 | 4210 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CAPZA3-201 | ENST00000317658 | 1087 nt | APPRIS P1 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | OR4F6-201 | ENST00000328882 | 1238 nt | APPRIS P1 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ELSPBP1-201 | ENST00000339841 | 1052 nt | APPRIS P2 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | C4orf47-201 | ENST00000378850 | 1134 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | MIR585-201 | ENST00000384887 | 94 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL121885.1-201 | ENST00000417957 | 451 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC006055.1-201 | ENST00000432423 | 411 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL158209.1-201 | ENST00000433460 | 439 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC076966.1-201 | ENST00000435560 | 351 nt | TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL162726.1-201 | ENST00000436084 | 455 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RPL23AP93-201 | ENST00000440847 | 484 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | TXNP2-201 | ENST00000443918 | 295 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | LINC01765-201 | ENST00000448680 | 491 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC012671.1-201 | ENST00000451912 | 203 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | C2orf80-207 | ENST00000453017 | 722 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CXorf51A-201 | ENST00000458472 | 431 nt | APPRIS P1 TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RPL23AP72-201 | ENST00000492447 | 435 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | MFAP3L-206 | ENST00000506110 | 548 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | GYPA-208 | ENST00000512064 | 441 nt | TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC097103.1-201 | ENST00000512398 | 273 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | CCNHP1-201 | ENST00000513311 | 678 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC015795.1-201 | ENST00000513669 | 327 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RNU4-18P-201 | ENST00000516751 | 149 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC124242.1-205 | ENST00000517798 | 646 nt | TSL 5 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC068672.2-201 | ENST00000524022 | 336 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC025857.1-201 | ENST00000525252 | 377 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC137768.1-201 | ENST00000549998 | 553 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC068446.3-201 | ENST00000555285 | 382 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC012146.1-201 | ENST00000571138 | 462 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC021549.1-201 | ENST00000580937 | 433 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | SNORA35B-201 | ENST00000607417 | 129 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC100847.1-201 | ENST00000611316 | 481 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC091905.2-201 | ENST00000623143 | 306 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC084816.1-212 | ENST00000625240 | 1114 nt | TSL 5 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC021355.1-202 | ENST00000519996 | 1633 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | LINS1-201 | ENST00000314742 | 4821 nt | APPRIS P1 TSL 5 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | TPRG1-201 | ENST00000345063 | 5479 nt | APPRIS P1 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | NFIB-203 | ENST00000380934 | 2142 nt | TSL 2 BASIC | 3.79 | □□□□□ -1.8 | | |
| MUC1 | P15941 | DTNA-203 | ENST00000315456 | 1706 nt | TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | TENM1-201 | ENST00000371130 | 12875 nt | APPRIS P3 TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | VPS13C-202 | ENST00000261517 | 13400 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | TRIM36-209 | ENST00000514154 | 1952 nt | TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AC018555.1-201 | ENST00000567548 | 1980 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | ESCO1-204 | ENST00000622333 | 1850 nt | TSL 2 BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | OR5AN1-201 | ENST00000313940 | 1037 nt | APPRIS P1 BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | RNA5-8SP7-201 | ENST00000363443 | 155 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | AL158212.2-201 | ENST00000369391 | 460 nt | TSL 3 BASIC | 3.78 | □□□□□ -1.8 | | |
| MUC1 | P15941 | OR5K3-201 | ENST00000383695 | 966 nt | APPRIS P1 BASIC | 3.78 | □□□□□ -1.8 | | |