Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.79□□□□□ -1.64
MSH4O15457 RNA5SP372-201ENST00000390836 115 ntBASIC4.79□□□□□ -1.64
MSH4O15457 RPS27AP11-201ENST00000402798 447 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AMZ2P2-201ENST00000406819 1057 ntBASIC4.79□□□□□ -1.64
MSH4O15457 RNA5SP296-201ENST00000410523 111 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH4O15457 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.79□□□□□ -1.64
MSH4O15457 COX6B1P7-201ENST00000430845 235 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH4O15457 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH4O15457 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH4O15457 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH4O15457 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH4O15457 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH4O15457 MRPL49P2-201ENST00000521066 465 ntBASIC4.79□□□□□ -1.64
MSH4O15457 PHBP17-201ENST00000528576 541 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AC100770.1-201ENST00000532310 322 ntBASIC4.79□□□□□ -1.64
MSH4O15457 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 TRAV11-201ENST00000539512 339 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH4O15457 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH4O15457 AC233702.9-201ENST00000581528 203 ntBASIC4.79□□□□□ -1.64
MSH4O15457 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 AL731566.2-201ENST00000618971 317 ntBASIC4.79□□□□□ -1.64
MSH4O15457 MIR8059-201ENST00000620427 81 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AC015813.6-201ENST00000624409 5808 ntBASIC4.79□□□□□ -1.64
MSH4O15457 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
MSH4O15457 AC092435.4-201ENST00000623012 4159 ntBASIC4.79□□□□□ -1.64
MSH4O15457 AP000756.2-201ENST00000624168 2567 ntBASIC4.79□□□□□ -1.64
MSH4O15457 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
MSH4O15457 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH4O15457 AL133243.3-201ENST00000617415 3004 ntBASIC4.78□□□□□ -1.64
MSH4O15457 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH4O15457 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH4O15457 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AC067945.1-201ENST00000342609 618 ntBASIC4.78□□□□□ -1.64
MSH4O15457 RNA5SP28-201ENST00000363841 119 ntBASIC4.78□□□□□ -1.64
MSH4O15457 OR13C3-201ENST00000374781 1108 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AL035696.2-201ENST00000407941 709 ntBASIC4.78□□□□□ -1.64
MSH4O15457 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH4O15457 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH4O15457 RPL23AP38-201ENST00000423801 469 ntBASIC4.78□□□□□ -1.64
MSH4O15457 SKP1P3-201ENST00000429280 487 ntBASIC4.78□□□□□ -1.64
MSH4O15457 RPL21P133-201ENST00000443666 476 ntBASIC4.78□□□□□ -1.64
MSH4O15457 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH4O15457 AC108145.1-201ENST00000503770 153 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 AC099522.1-202ENST00000514718 367 ntBASIC4.78□□□□□ -1.64
MSH4O15457 SNORA31.9-201ENST00000516429 84 ntBASIC4.78□□□□□ -1.64
MSH4O15457 IGKV2D-10-201ENST00000520194 281 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 DUX4L52-201ENST00000549363 777 ntBASIC4.78□□□□□ -1.64
MSH4O15457 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 AL049874.4-201ENST00000557593 255 ntBASIC4.78□□□□□ -1.64
MSH4O15457 MIR4675-201ENST00000577898 77 ntBASIC4.78□□□□□ -1.64
MSH4O15457 RN7SL600P-201ENST00000581811 299 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH4O15457 AC006116.5-201ENST00000591936 559 ntBASIC4.78□□□□□ -1.64
MSH4O15457 AC026979.4-201ENST00000606555 645 ntBASIC4.78□□□□□ -1.64
MSH4O15457 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.78□□□□□ -1.64
MSH4O15457 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH4O15457 AL158062.1-201ENST00000619632 745 ntBASIC4.78□□□□□ -1.64
MSH4O15457 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
MSH4O15457 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH4O15457 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH4O15457 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH4O15457 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
MSH4O15457 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH4O15457 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH4O15457 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH4O15457 AL121657.1-201ENST00000327215 531 ntBASIC4.77□□□□□ -1.65
MSH4O15457 MIR137-201ENST00000385223 102 ntBASIC4.77□□□□□ -1.65
MSH4O15457 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 VN1R8P-201ENST00000407739 893 ntBASIC4.77□□□□□ -1.65
MSH4O15457 RN7SKP182-201ENST00000410772 298 ntBASIC4.77□□□□□ -1.65
MSH4O15457 AC009237.10-201ENST00000414112 510 ntBASIC4.77□□□□□ -1.65
MSH4O15457 AL161631.1-201ENST00000417933 486 ntBASIC4.77□□□□□ -1.65
MSH4O15457 EIF2S2P3-201ENST00000428356 999 ntBASIC4.77□□□□□ -1.65
MSH4O15457 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH4O15457 AL138787.1-202ENST00000437804 898 ntBASIC4.77□□□□□ -1.65
MSH4O15457 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 399.8 ms