Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 AC091874.3-201ENST00000512672 1195 ntBASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 FP475955.4-201ENST00000623131 1990 ntBASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 KRT8P8-201ENST00000434750 1448 ntBASIC21.21■□□□□ 0.99
LIMA1Q9UHB6 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 YBX1P10-201ENST00000444752 975 ntBASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 AC083906.2-201ENST00000511578 360 ntBASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMA1Q9UHB6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AL031598.1-201ENST00000561511 1773 ntBASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AL121832.2-201ENST00000610979 668 ntBASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AP006587.1-201ENST00000534129 1502 ntBASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 AC093525.10-201ENST00000625130 1569 ntBASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMA1Q9UHB6 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms