Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC22.55■■□□□ 1.2
CTCFP49711 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.55■■□□□ 1.2
CTCFP49711 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC22.55■■□□□ 1.2
CTCFP49711 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC22.55■■□□□ 1.2
CTCFP49711 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC22.55■■□□□ 1.2
CTCFP49711 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTCFP49711 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTCFP49711 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC22.55■■□□□ 1.2
CTCFP49711 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC22.55■■□□□ 1.2
CTCFP49711 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.54■■□□□ 1.2
CTCFP49711 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 BX842568.4-201ENST00000421222 227 ntBASIC22.54■■□□□ 1.2
CTCFP49711 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.54■■□□□ 1.2
CTCFP49711 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.54■■□□□ 1.2
CTCFP49711 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CTCFP49711 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CTCFP49711 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTCFP49711 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC22.54■■□□□ 1.2
CTCFP49711 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.53■■□□□ 1.2
CTCFP49711 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.53■■□□□ 1.2
CTCFP49711 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC22.53■■□□□ 1.2
CTCFP49711 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.53■■□□□ 1.2
CTCFP49711 PNN-202ENST00000553331 656 ntTSL 3 BASIC22.53■■□□□ 1.2
CTCFP49711 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 IL9RP2-201ENST00000423948 1312 ntBASIC22.53■■□□□ 1.2
CTCFP49711 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC22.53■■□□□ 1.2
CTCFP49711 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.53■■□□□ 1.2
CTCFP49711 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTCFP49711 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC22.52■■□□□ 1.2
CTCFP49711 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 TSPY12P-201ENST00000421279 868 ntBASIC22.52■■□□□ 1.2
CTCFP49711 PMS2P2-201ENST00000425039 1128 ntBASIC22.52■■□□□ 1.2
CTCFP49711 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.52■■□□□ 1.2
CTCFP49711 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 RASA4DP-201ENST00000460726 1199 ntBASIC22.52■■□□□ 1.2
CTCFP49711 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC22.52■■□□□ 1.2
CTCFP49711 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC22.52■■□□□ 1.2
CTCFP49711 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.52■■□□□ 1.2
CTCFP49711 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTCFP49711 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.51■■□□□ 1.19
CTCFP49711 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
CTCFP49711 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.51■■□□□ 1.19
CTCFP49711 AC005104.2-201ENST00000427818 678 ntBASIC22.51■■□□□ 1.19
CTCFP49711 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC22.51■■□□□ 1.19
CTCFP49711 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC22.51■■□□□ 1.19
CTCFP49711 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC22.51■■□□□ 1.19
CTCFP49711 VPS51-217ENST00000639871 243 ntTSL 5 BASIC22.51■■□□□ 1.19
CTCFP49711 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.51■■□□□ 1.19
CTCFP49711 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CTCFP49711 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTCFP49711 AC007375.3-201ENST00000600936 2314 ntBASIC22.51■■□□□ 1.19
CTCFP49711 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.5■■□□□ 1.19
CTCFP49711 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC22.5■■□□□ 1.19
CTCFP49711 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC22.5■■□□□ 1.19
CTCFP49711 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.5■■□□□ 1.19
CTCFP49711 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC22.5■■□□□ 1.19
CTCFP49711 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC22.5■■□□□ 1.19
CTCFP49711 FOSL1P1-201ENST00000511041 816 ntBASIC22.5■■□□□ 1.19
CTCFP49711 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC22.5■■□□□ 1.19
CTCFP49711 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms