Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC073073.1-201ENST00000493920 463 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC008565.1-201ENST00000509046 885 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 COX6B1P6-201ENST00000522347 255 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 GLRXP2-201ENST00000555594 321 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AP005229.2-201ENST00000609980 697 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC253576.2-201ENST00000618815 580 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AP001784.1-201ENST00000624107 428 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AP003072.4-201ENST00000624580 310 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC016717.3-201ENST00000624730 554 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC134882.1-201ENST00000603738 1676 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC073429.2-201ENST00000569694 1444 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 RN7SKP149-201ENST00000363008 344 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 OR52E6-202ENST00000379946 954 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC092745.2-202ENST00000411880 369 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AL139128.1-201ENST00000413921 941 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AL450023.3-201ENST00000440592 271 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 YWHAQP9-201ENST00000445891 512 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 MRPL35P2-201ENST00000448009 511 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC010683.1-201ENST00000473673 378 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 RNA5SP303-201ENST00000516192 130 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 GCSHP4-201ENST00000538792 439 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 MIR3908-201ENST00000579798 126 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 PCNAP1-202ENST00000595299 752 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 BNIP3P32-201ENST00000600015 554 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC087783.2-201ENST00000605070 562 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC016542.1-201ENST00000608259 493 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AP001521.2-201ENST00000608772 546 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC096586.1-201ENST00000610267 561 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC068880.4-201ENST00000623082 495 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AL132640.2-201ENST00000559968 1698 ntBASIC5.07□□□□□ -1.6
VPS28Q9UK41 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
VPS28Q9UK41 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS28Q9UK41 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 MAPK10-263ENST00000641052 4307 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms