Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL353600.1-201ENST00000608148 251 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 MIR6730-201ENST00000622213 67 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC099654.9-201ENST00000637055 678 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC006927.2-201ENST00000639256 389 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
NKX3-1Q99801 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC010329.2-201ENST00000595195 2737 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 LINC01109-201ENST00000603837 3081 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 SNORD96B-201ENST00000386148 79 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 RNA5SP498-201ENST00000411342 120 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC013404.1-201ENST00000413068 249 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 TBCAP2-201ENST00000416175 326 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC093162.1-201ENST00000419682 124 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 E2F6P2-201ENST00000420708 748 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC007394.1-201ENST00000421941 531 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC241520.1-201ENST00000422654 1099 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 TDGF1P1-201ENST00000445734 527 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL645937.3-201ENST00000453647 936 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 RPL7AP52-201ENST00000458096 790 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL591473.1-201ENST00000464297 313 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 RPL7AP6-201ENST00000477943 801 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC093270.2-201ENST00000486157 792 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC110760.3-202ENST00000515177 371 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 SNORA19.3-201ENST00000516165 130 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 HMGB1P19-201ENST00000517578 577 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 MIR4789-201ENST00000577469 82 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC069431.2-201ENST00000604149 1099 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC099785.1-201ENST00000605697 437 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL445222.1-201ENST00000607259 628 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 OR7A19P-201ENST00000608051 733 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL050303.3-201ENST00000613704 284 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 MIR8069-1-201ENST00000616627 86 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 MIR8069-2-201ENST00000621412 86 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 AC024023.1-201ENST00000624530 922 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 AL445437.1-201ENST00000623157 3087 ntBASIC4.23□□□□□ -1.73
NKX3-1Q99801 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NKX3-1Q99801 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.23□□□□□ -1.73
NKX3-1Q99801 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 CASC19-206ENST00000641028 1430 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC027290.2-201ENST00000623210 18662 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 U8.4-201ENST00000363626 134 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 SNORA72.3-201ENST00000365074 132 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 RNA5SP455-201ENST00000365190 119 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 RNU4-31P-201ENST00000384211 141 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 RNU6-298P-201ENST00000390888 96 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 MTND4P11-201ENST00000417020 1058 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 ETF1P3-201ENST00000430422 1160 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms