Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS35Q96QK1 AL133268.1-201ENST00000405676 1401 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL391684.1-202ENST00000641293 1636 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC092435.4-201ENST00000623012 4159 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC021146.4-201ENST00000309229 279 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 RNU6-398P-201ENST00000384143 109 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 RNU6-532P-201ENST00000384318 107 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 MIR921-201ENST00000401133 56 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC009302.1-201ENST00000417147 390 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC245028.1-201ENST00000423259 256 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC099063.2-201ENST00000446360 662 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL445433.1-201ENST00000457507 257 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 RN7SL354P-201ENST00000469282 294 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 RPL23AP72-201ENST00000492447 435 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 RNA5SP228-201ENST00000516232 133 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 NPM1P6-201ENST00000521088 871 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC079791.1-201ENST00000605356 973 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 COX6CP4-201ENST00000605798 228 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC135803.1-201ENST00000608748 565 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC074276.2-201ENST00000619891 348 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL023881.1-201ENST00000621088 301 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC119674.1-212ENST00000641155 993 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 AC068254.2-201ENST00000623938 3577 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL355852.1-201ENST00000454081 1771 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 AL592148.3-201ENST00000608771 2646 ntBASIC4.55□□□□□ -1.68
VPS35Q96QK1 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS35Q96QK1 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS35Q96QK1 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC107027.3-201ENST00000565095 3473 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC091046.3-201ENST00000631455 1574 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 BX005019.1-201ENST00000561881 1810 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 RNA5SP505-201ENST00000364748 108 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AL512430.2-201ENST00000406786 339 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC245517.2-201ENST00000442890 346 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 UBA52P3-201ENST00000491303 382 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC008897.1-201ENST00000494006 347 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 VWA8P1-201ENST00000510889 176 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 RNU6-760P-201ENST00000516078 97 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AP001781.1-201ENST00000530977 207 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 HMGB2P1-201ENST00000591146 634 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 RPL26P30-202ENST00000602923 645 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC023762.1-201ENST00000603280 584 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC090953.1-201ENST00000604305 1092 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 IMMP1LP1-201ENST00000605170 488 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 BX322635.1-201ENST00000605804 496 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC019193.2-201ENST00000610012 634 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 MIR6820-201ENST00000611508 62 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 MAPK10-303ENST00000641324 3959 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 OR56B2P-202ENST00000641377 2453 ntBASIC4.54□□□□□ -1.68
VPS35Q96QK1 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS35Q96QK1 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
VPS35Q96QK1 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms