Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 PFN1P11-201ENST00000445829 389 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 VN1R38P-201ENST00000450265 887 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL035090.1-201ENST00000454835 332 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RNU6-420P-201ENST00000458780 107 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 snoU13.8-201ENST00000458890 104 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AP000852.1-201ENST00000472460 573 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RN7SL561P-201ENST00000488553 281 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 SNRPCP6-201ENST00000528310 210 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AP003497.1-201ENST00000528472 562 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC034105.3-201ENST00000565294 442 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC090615.1-201ENST00000577519 154 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 MIR4312-201ENST00000579909 76 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC068790.5-201ENST00000602741 355 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC007621.1-201ENST00000604544 437 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL009028.1-201ENST00000604895 802 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 PTCHD3P1-201ENST00000612350 537 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC015819.1-201ENST00000613588 663 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL049794.2-201ENST00000616301 365 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC090527.3-201ENST00000619041 548 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC079597.1-201ENST00000624306 508 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 LINC00622-201ENST00000562811 1570 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC009229.4-201ENST00000623854 1947 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC131971.1-201ENST00000332881 1482 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RNU6-97P-201ENST00000363387 104 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RNY1P12-201ENST00000364251 105 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RN7SKP130-201ENST00000364924 301 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RNA5SP152-201ENST00000365184 110 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RNU2-21P-201ENST00000410368 188 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RN7SKP235-201ENST00000410662 305 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AL713922.1-201ENST00000416477 747 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 MTATP6P18-201ENST00000417994 673 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RPS26P47-201ENST00000427219 348 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 GTF2IP20-201ENST00000431663 360 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 GEMIN8P3-201ENST00000445417 720 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AMD1P1-201ENST00000457220 922 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 SULT1D1P-201ENST00000458020 882 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RPS29P25-201ENST00000481709 171 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 HMGN1P12-201ENST00000499125 195 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 MTCYBP18-201ENST00000501056 747 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 RNA5SP318-201ENST00000516352 92 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC068993.1-201ENST00000546724 589 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC123904.3-201ENST00000547218 814 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms