Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 OR4A15-201ENST00000314706 1035 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 RNA5SP513-201ENST00000364648 118 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 RAB9AP3-201ENST00000412737 573 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 TPT1P2-201ENST00000413105 503 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 RAB9AP1-201ENST00000449393 573 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AC027807.1-201ENST00000559921 996 ntBASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC88AQ3V6T2 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 RNU6-316P-201ENST00000391027 107 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AL080315.1-201ENST00000406055 466 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 UBTFL3-201ENST00000418934 1024 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AC115285.1-201ENST00000424879 736 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 TMX2P1-201ENST00000436507 708 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 RPL23AP65-201ENST00000475608 468 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 UBTFL6-201ENST00000477929 1024 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 RPS4XP18-201ENST00000495480 763 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AC026427.2-201ENST00000506228 536 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 TVP23BP1-201ENST00000557500 617 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 RPL23AP97-201ENST00000568955 471 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AL929601.4-201ENST00000613011 1341 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 MIR491-201ENST00000384877 84 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 MIR483-201ENST00000385070 76 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AL121878.1-201ENST00000418638 859 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 PAICSP4-201ENST00000517543 1253 ntBASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC88AQ3V6T2 CASC19-204ENST00000641001 2055 ntBASIC5.21□□□□□ -1.57
CCDC88AQ3V6T2 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AC018644.1-201ENST00000429934 551 ntBASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AC008966.2-201ENST00000606157 453 ntBASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 AC009093.8-201ENST00000641769 292 ntBASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
CCDC88AQ3V6T2 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms