Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL731566.1-201ENST00000620490 1937 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RNA5SP27-201ENST00000363839 119 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RPS3AP23-201ENST00000401762 784 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC233289.1-201ENST00000403700 508 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC106883.1-201ENST00000418805 562 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL389915.1-201ENST00000422463 466 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RPL34P6-201ENST00000432390 345 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RHOT1P3-201ENST00000436571 331 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC000041.1-201ENST00000439655 175 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 OR52E3P-201ENST00000452083 936 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RPL7AP52-201ENST00000458096 790 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RN7SKP92-201ENST00000517266 244 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC025260.1-201ENST00000548858 430 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC027104.1-201ENST00000563702 681 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC233702.9-201ENST00000581528 203 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 MIR7853-201ENST00000584820 132 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 RN7SL622P-201ENST00000585292 275 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL606834.3-201ENST00000602615 496 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC135068.5-201ENST00000624197 983 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC100757.1-201ENST00000616872 1835 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL122126.1-201ENST00000546905 1318 ntBASIC4.94□□□□□ -1.62
COL28A1Q2UY09 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 MIR134-201ENST00000385258 73 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC009237.10-201ENST00000414112 510 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC009237.5-201ENST00000414271 501 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 LINC01881-201ENST00000416103 412 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 RPL7P57-201ENST00000423238 740 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CENPIP1-201ENST00000425713 902 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL451062.2-201ENST00000427515 271 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 HSFY3P-201ENST00000444242 1191 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL035407.2-201ENST00000454090 378 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 RNA5SP103-201ENST00000459503 118 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC111193.1-201ENST00000504097 155 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC108471.1-201ENST00000513977 287 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 RN7SKP260-201ENST00000516907 149 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 SCARNA20.4-201ENST00000516969 131 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC011611.5-201ENST00000552477 578 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL109766.1-201ENST00000555080 552 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC022884.3-201ENST00000579571 248 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms