Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC019176.2-201ENST00000611579 315 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL18A1P39060 AP000473.2-201ENST00000602659 1537 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 AC024560.2-201ENST00000507981 1497 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 AC000374.1-201ENST00000434698 1745 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
COL18A1P39060 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 MIR30B-201ENST00000384850 88 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 MIR183-201ENST00000384958 110 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC083863.1-201ENST00000438811 231 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.39□□□□□ -1.55
COL18A1P39060 RN7SL323P-201ENST00000494712 295 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 RNA5SP179-201ENST00000517284 121 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.39□□□□□ -1.55
COL18A1P39060 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.39□□□□□ -1.55
COL18A1P39060 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC005086.4-201ENST00000623065 213 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.39□□□□□ -1.55
COL18A1P39060 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL18A1P39060 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL18A1P39060 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL18A1P39060 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL18A1P39060 MIR200C-201ENST00000384980 68 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 SNORD96B-201ENST00000386148 79 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 RPL21P17-201ENST00000397467 475 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 AC092691.2-201ENST00000461787 803 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.38□□□□□ -1.55
COL18A1P39060 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.38□□□□□ -1.55
COL18A1P39060 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 AC087369.1-201ENST00000520775 996 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.38□□□□□ -1.55
COL18A1P39060 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.38□□□□□ -1.55
COL18A1P39060 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.38□□□□□ -1.55
COL18A1P39060 SRGNP1-201ENST00000603392 451 ntBASIC5.38□□□□□ -1.55
COL18A1P39060 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.38□□□□□ -1.55
COL18A1P39060 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
COL18A1P39060 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL18A1P39060 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL18A1P39060 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.37□□□□□ -1.55
COL18A1P39060 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 ATP5F1P4-201ENST00000397288 746 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 SNORA57.3-201ENST00000411095 141 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.37□□□□□ -1.55
COL18A1P39060 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC018635.1-201ENST00000468292 1030 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AC128716.1-201ENST00000475129 166 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.37□□□□□ -1.55
COL18A1P39060 RNU1-95P-201ENST00000516357 160 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 RNU1-128P-201ENST00000516704 160 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 SOD1P3-201ENST00000518682 454 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 DUXAP2-201ENST00000519198 589 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.37□□□□□ -1.55
COL18A1P39060 MIR432-201ENST00000606207 94 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AC007342.8-201ENST00000623278 678 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 SNORA60-201ENST00000362396 134 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC008155.2-201ENST00000464337 397 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.37□□□□□ -1.55
COL18A1P39060 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.37□□□□□ -1.55
COL18A1P39060 VN1R92P-201ENST00000598511 928 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AC015726.1-201ENST00000602353 681 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AF131215.7-201ENST00000602443 707 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 QTRT1P1-201ENST00000604344 1078 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AC018816.2-201ENST00000621460 353 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 AC019278.1-201ENST00000623516 479 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 U6.105-201ENST00000637379 88 ntBASIC5.37□□□□□ -1.55
COL18A1P39060 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL18A1P39060 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms