Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL2A1P02458 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL2A1P02458 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
COL2A1P02458 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 MIR483-201ENST00000385070 76 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 U3.23-201ENST00000391132 200 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.03□□□□□ -1.6
COL2A1P02458 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL2A1P02458 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.03□□□□□ -1.6
COL2A1P02458 AC108022.1-201ENST00000493466 478 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.03□□□□□ -1.6
COL2A1P02458 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.03□□□□□ -1.6
COL2A1P02458 RPAP2P1-201ENST00000603626 1168 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 AC024933.1-201ENST00000608472 348 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 AC008147.4-201ENST00000617570 1204 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
COL2A1P02458 AC010608.2-201ENST00000624830 470 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 AC012442.3-202ENST00000636742 206 ntBASIC5.03□□□□□ -1.6
COL2A1P02458 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
COL2A1P02458 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL2A1P02458 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL2A1P02458 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.03□□□□□ -1.6
COL2A1P02458 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.03□□□□□ -1.61
COL2A1P02458 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL2A1P02458 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
COL2A1P02458 RNA5SP130-201ENST00000364431 114 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 PEX12P1-201ENST00000400284 1048 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 RN7SKP159-201ENST00000410657 292 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 TPT1P2-201ENST00000413105 503 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.02□□□□□ -1.61
COL2A1P02458 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.02□□□□□ -1.61
COL2A1P02458 CEACAMP1-201ENST00000434624 1035 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AC007389.2-201ENST00000434630 306 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 RPL23AP46-201ENST00000438548 490 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.02□□□□□ -1.61
COL2A1P02458 AC006326.1-201ENST00000445465 787 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.02□□□□□ -1.61
COL2A1P02458 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.02□□□□□ -1.61
COL2A1P02458 AC091564.1-201ENST00000464563 479 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AC104629.1-201ENST00000494226 508 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.02□□□□□ -1.61
COL2A1P02458 SNORA74D-201ENST00000516404 141 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 CYCSP28-201ENST00000534284 321 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.02□□□□□ -1.61
COL2A1P02458 AC009852.2-201ENST00000567898 485 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.02□□□□□ -1.61
COL2A1P02458 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.02□□□□□ -1.61
COL2A1P02458 AC140113.4-201ENST00000622087 222 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 AC007529.1-201ENST00000418574 2178 ntBASIC5.02□□□□□ -1.61
COL2A1P02458 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.02□□□□□ -1.61
COL2A1P02458 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL2A1P02458 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL2A1P02458 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.01□□□□□ -1.61
COL2A1P02458 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 MIR1179-201ENST00000408703 91 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.01□□□□□ -1.61
COL2A1P02458 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.01□□□□□ -1.61
COL2A1P02458 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.01□□□□□ -1.61
COL2A1P02458 AL117339.2-201ENST00000430475 180 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 AL133547.1-201ENST00000448546 220 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 SETP4-201ENST00000455717 868 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 AC112206.1-201ENST00000468416 477 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.01□□□□□ -1.61
COL2A1P02458 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.01□□□□□ -1.61
COL2A1P02458 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.01□□□□□ -1.61
COL2A1P02458 AL162574.2-201ENST00000614618 657 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 AC020978.9-201ENST00000624380 1141 ntBASIC5.01□□□□□ -1.61
COL2A1P02458 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.01□□□□□ -1.61
COL2A1P02458 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.01□□□□□ -1.61
COL2A1P02458 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
COL2A1P02458 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL2A1P02458 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL2A1P02458 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
COL2A1P02458 SNORA40.4-201ENST00000390971 128 ntBASIC5□□□□□ -1.61
COL2A1P02458 MTND3P20-201ENST00000407663 186 ntBASIC5□□□□□ -1.61
COL2A1P02458 MIR1911-201ENST00000410783 80 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms