Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR141-201ENST00000384975 95 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 MIR600-201ENST00000385007 98 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 SNORD65-201ENST00000391079 73 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 XKRYP4-201ENST00000414395 483 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 RPL26P29-201ENST00000415623 438 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 MTCO3P4-201ENST00000419236 787 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC245028.1-201ENST00000423259 256 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 PNRC2P1-201ENST00000423940 420 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 AL360081.1-201ENST00000428299 555 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 COX6CP13-201ENST00000428703 226 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 RPL35AP21-201ENST00000437667 333 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 OR6K5P-201ENST00000447050 945 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 RPL31P44-201ENST00000447680 377 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 XKRYP5-201ENST00000449659 483 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 ZNF886P-201ENST00000450781 723 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 TPT1P3-201ENST00000492841 512 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 AC026414.1-201ENST00000504046 698 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 Y_RNA.688-201ENST00000516565 95 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 OR5AZ1P-201ENST00000527448 943 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 OR8I1P-201ENST00000529291 931 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 ZNF321P-202ENST00000550843 495 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC009094.1-201ENST00000564443 426 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC021483.2-201ENST00000567415 758 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 RN7SL52P-201ENST00000584271 284 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.4□□□□□ -1.71
LMX1BO60663 BMS1P7-201ENST00000602440 1052 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC091057.2-201ENST00000602594 792 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC069304.3-201ENST00000603938 1084 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 Z94722.1-201ENST00000604328 474 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 RN7SL722P-201ENST00000617780 284 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 RN7SL565P-201ENST00000618246 284 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC022079.2-201ENST00000619739 566 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 MIR6810-201ENST00000622701 70 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC139792.2-201ENST00000624218 587 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC079416.3-201ENST00000624479 549 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.4□□□□□ -1.71
LMX1BO60663 AL121594.5-201ENST00000631724 573 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.4□□□□□ -1.71
LMX1BO60663 AC135068.12-201ENST00000637370 931 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 AC025574.1-201ENST00000554784 1653 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.4□□□□□ -1.71
LMX1BO60663 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.4□□□□□ -1.71
LMX1BO60663 AC120338.1-201ENST00000625074 1541 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 MUC2-202ENST00000613187 4845 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.4□□□□□ -1.71
LMX1BO60663 TCP11X1-202ENST00000622971 1372 ntBASIC4.4□□□□□ -1.71
LMX1BO60663 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.4□□□□□ -1.71
LMX1BO60663 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
LMX1BO60663 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
LMX1BO60663 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
LMX1BO60663 THAP12P4-201ENST00000528321 2266 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.39□□□□□ -1.71
LMX1BO60663 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.39□□□□□ -1.71
LMX1BO60663 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LMX1BO60663 INTS6P1-201ENST00000504674 2530 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.39□□□□□ -1.71
LMX1BO60663 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
LMX1BO60663 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.39□□□□□ -1.71
LMX1BO60663 AC017079.1-201ENST00000333650 415 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LMX1BO60663 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LMX1BO60663 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.39□□□□□ -1.71
LMX1BO60663 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
LMX1BO60663 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LMX1BO60663 RNU6-31P-201ENST00000384388 108 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 AC007068.1-201ENST00000396690 844 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 LRRC37BP1-201ENST00000398851 714 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 MIR1182-201ENST00000408363 97 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 AC007738.1-201ENST00000413892 348 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 AC008173.1-201ENST00000418901 264 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 MTCYBP7-201ENST00000419540 1134 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 OR2AH1P-201ENST00000425717 928 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 USP9YP9-201ENST00000429406 715 ntBASIC4.39□□□□□ -1.71
LMX1BO60663 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.39□□□□□ -1.71
LMX1BO60663 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms