Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MIR298-201ENST00000401212 88 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC013404.1-201ENST00000413068 249 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 TAF13P2-201ENST00000416876 286 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL158073.1-201ENST00000426848 1104 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MTCO1P52-201ENST00000433928 531 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 NANOGP2-201ENST00000435391 727 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 KATNBL1P3-201ENST00000443475 909 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 KNOP1P3-201ENST00000446933 426 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL445687.2-201ENST00000458156 728 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 snoU13.22-201ENST00000459428 104 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 PSAT1P4-201ENST00000466500 526 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MTND2P14-201ENST00000482139 351 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 RN7SL244P-201ENST00000493405 297 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC117522.2-201ENST00000510049 657 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC010486.3-201ENST00000511602 785 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MIR4715-201ENST00000584117 79 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC093227.2-201ENST00000589357 285 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC010503.3-201ENST00000594355 540 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC091057.2-201ENST00000602594 792 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC021749.1-201ENST00000604322 607 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 Z94722.1-201ENST00000604328 474 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 MEMO1P5-201ENST00000604810 406 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 NANOGP3-201ENST00000605855 286 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC064807.4-201ENST00000607201 407 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC009237.15-201ENST00000610252 501 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 VN1R74P-201ENST00000613259 503 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 LINC02211-204ENST00000642024 1070 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 AC111188.2-201ENST00000529697 1387 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 KARSP3-201ENST00000571212 1504 ntBASIC6.3□□□□□ -1.4
SMC1BQ8NDV3 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 RNU1-64P-201ENST00000365443 163 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 SNORD116-8-201ENST00000384365 95 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 SNORA37-201ENST00000384504 129 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL591848.1-201ENST00000413092 322 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 Z75741.2-201ENST00000417272 1167 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 DPPA2P2-201ENST00000418220 897 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 REREP1Y-201ENST00000422655 198 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 TXNL1P1-201ENST00000429528 554 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 REREP2Y-201ENST00000439103 200 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC104634.1-201ENST00000452720 462 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC090602.1-201ENST00000469695 252 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AP000797.2-201ENST00000475768 606 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC010486.2-201ENST00000505572 483 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC104108.1-201ENST00000509930 412 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 GCSHP4-201ENST00000538792 439 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL512782.1-201ENST00000603093 364 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL135786.2-201ENST00000608422 615 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC007342.8-201ENST00000623278 678 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AC017037.3-201ENST00000625016 472 ntBASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms