Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC005341.1-201ENST00000571086 708 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AL109653.1-201ENST00000603091 248 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AC009027.1-201ENST00000604510 479 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AL133507.1-201ENST00000605269 557 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AC109583.2-201ENST00000617367 129 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AL603755.1-201ENST00000619504 163 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AP003400.3-201ENST00000624904 346 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 OR8B1P-202ENST00000641132 1178 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 AL138820.1-201ENST00000617901 5305 ntBASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PTCHD3Q3KNS1 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
PTCHD3Q3KNS1 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AP005432.1-201ENST00000580891 3485 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 IGKV7-3-201ENST00000357453 298 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MIR133B-201ENST00000362210 119 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RNU1-19P-201ENST00000363306 165 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MIR105-2-201ENST00000385083 81 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RNA5SP241-201ENST00000391326 114 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 SPTLC1P2-201ENST00000407089 121 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 SNORA11C-201ENST00000408532 129 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-77P-201ENST00000410554 91 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MTND4P22-201ENST00000413116 1169 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC016769.2-201ENST00000414815 475 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 UBE2D3P1-201ENST00000436669 444 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC090804.1-201ENST00000448870 490 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC104978.1-201ENST00000449387 391 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RHEBP2-201ENST00000450289 600 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL133217.1-201ENST00000450980 425 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 DNAJC19P8-201ENST00000452887 259 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 NECAP1P2-201ENST00000455668 727 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RN7SL172P-201ENST00000460535 303 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC073522.1-201ENST00000483312 377 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC118282.2-201ENST00000508739 374 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 OR10G5P-201ENST00000532733 358 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL356057.1-201ENST00000533798 831 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC126177.5-201ENST00000549599 178 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL049779.2-201ENST00000553847 315 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC002400.1-201ENST00000569310 726 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC010620.1-201ENST00000601088 1102 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AP003392.5-201ENST00000607857 415 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AP000238.1-201ENST00000608759 426 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC018445.2-201ENST00000622987 260 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC067852.7-201ENST00000623270 535 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 AC007490.1-201ENST00000624321 703 ntBASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTCHD3Q3KNS1 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-560P-201ENST00000364007 108 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 Y_RNA.465-201ENST00000384293 102 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RNA5SP187-201ENST00000384400 119 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RNU6-225P-201ENST00000384613 103 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms