Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 GAPDHP24-201ENST00000328713 983 ntBASIC5.89□□□□□ -1.47
RNF4P78317 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 RNA5SP333-201ENST00000363466 118 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RNY4P14-201ENST00000363656 96 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RNA5SP334-201ENST00000364825 118 ntBASIC5.89□□□□□ -1.47
RNF4P78317 Y_RNA.402-201ENST00000383972 102 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RNU6-533P-201ENST00000384144 107 ntBASIC5.89□□□□□ -1.47
RNF4P78317 U3.23-201ENST00000391132 200 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AL157702.1-201ENST00000398764 426 ntBASIC5.89□□□□□ -1.47
RNF4P78317 GSTA9P-201ENST00000406231 611 ntBASIC5.89□□□□□ -1.47
RNF4P78317 U3.43-201ENST00000410734 213 ntBASIC5.89□□□□□ -1.47
RNF4P78317 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 CLUHP1-201ENST00000435012 1190 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC002504.1-201ENST00000438281 691 ntBASIC5.89□□□□□ -1.47
RNF4P78317 MTND4LP16-201ENST00000440828 295 ntBASIC5.89□□□□□ -1.47
RNF4P78317 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 TRGVB-201ENST00000453257 471 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.89□□□□□ -1.47
RNF4P78317 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 UBDP1-202ENST00000457888 382 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 RPL12P31-201ENST00000478433 450 ntBASIC5.89□□□□□ -1.47
RNF4P78317 ACTR3P3-201ENST00000480448 893 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RPS3AP14-201ENST00000483907 780 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RN7SL362P-201ENST00000494228 267 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC012170.1-201ENST00000495139 359 ntBASIC5.89□□□□□ -1.47
RNF4P78317 RN7SL649P-201ENST00000496974 275 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC091951.2-201ENST00000500762 203 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC019235.1-201ENST00000503847 207 ntBASIC5.89□□□□□ -1.47
RNF4P78317 SUMO2P4-201ENST00000504193 276 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AC009646.1-201ENST00000510455 318 ntBASIC5.89□□□□□ -1.47
RNF4P78317 KHDC1P1-201ENST00000511053 508 ntBASIC5.89□□□□□ -1.47
RNF4P78317 SCARNA6.1-201ENST00000516989 238 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AF279873.1-201ENST00000523393 313 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
RNF4P78317 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.89□□□□□ -1.47
RNF4P78317 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 AC005332.4-201ENST00000592752 579 ntBASIC5.89□□□□□ -1.47
RNF4P78317 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AL008723.3-201ENST00000608926 449 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AP001521.1-201ENST00000609150 300 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AC092681.3-201ENST00000609463 678 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AL590282.1-201ENST00000610379 1136 ntBASIC5.89□□□□□ -1.47
RNF4P78317 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 AC126175.1-201ENST00000617041 758 ntBASIC5.89□□□□□ -1.47
RNF4P78317 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.89□□□□□ -1.47
RNF4P78317 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.89□□□□□ -1.47
RNF4P78317 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.89□□□□□ -1.47
RNF4P78317 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
RNF4P78317 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
RNF4P78317 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.88□□□□□ -1.47
RNF4P78317 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AL731556.1-201ENST00000394628 3711 ntBASIC5.88□□□□□ -1.47
RNF4P78317 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 SNRPEP3-201ENST00000338402 276 ntBASIC5.88□□□□□ -1.47
RNF4P78317 RNU6-181P-201ENST00000363225 107 ntBASIC5.88□□□□□ -1.47
RNF4P78317 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 RNU6-1151P-201ENST00000384684 107 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms