Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.23□□□□□ -1.73
LIM2P55344 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.23□□□□□ -1.73
LIM2P55344 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LIM2P55344 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.23□□□□□ -1.73
LIM2P55344 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
LIM2P55344 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
LIM2P55344 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.23□□□□□ -1.73
LIM2P55344 RPS4XP9-201ENST00000405151 780 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC062016.2-201ENST00000420950 676 ntBASIC4.23□□□□□ -1.73
LIM2P55344 CENPIP1-201ENST00000425713 902 ntBASIC4.23□□□□□ -1.73
LIM2P55344 MTND4LP14-201ENST00000429447 288 ntBASIC4.23□□□□□ -1.73
LIM2P55344 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.23□□□□□ -1.73
LIM2P55344 AL157827.1-201ENST00000447622 132 ntBASIC4.23□□□□□ -1.73
LIM2P55344 MTND5P8-201ENST00000449817 1083 ntBASIC4.23□□□□□ -1.73
LIM2P55344 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.23□□□□□ -1.73
LIM2P55344 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 AP002345.1-201ENST00000456493 928 ntBASIC4.23□□□□□ -1.73
LIM2P55344 RN7SL738P-201ENST00000470264 297 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC090013.1-201ENST00000485147 480 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.23□□□□□ -1.73
LIM2P55344 AC021146.7-201ENST00000509604 775 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.23□□□□□ -1.73
LIM2P55344 AC093770.1-201ENST00000511559 571 ntBASIC4.23□□□□□ -1.73
LIM2P55344 MTCYBP19-201ENST00000517463 1124 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC090151.1-201ENST00000520784 730 ntBASIC4.23□□□□□ -1.73
LIM2P55344 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
LIM2P55344 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.23□□□□□ -1.73
LIM2P55344 AC068020.1-201ENST00000594215 661 ntBASIC4.23□□□□□ -1.73
LIM2P55344 RPL12P25-202ENST00000598100 674 ntBASIC4.23□□□□□ -1.73
LIM2P55344 AC006065.6-201ENST00000625201 545 ntBASIC4.23□□□□□ -1.73
LIM2P55344 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.23□□□□□ -1.73
LIM2P55344 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.23□□□□□ -1.73
LIM2P55344 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIM2P55344 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.22□□□□□ -1.73
LIM2P55344 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
LIM2P55344 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 RPA2P2-201ENST00000419698 796 ntBASIC4.22□□□□□ -1.73
LIM2P55344 PDSS1P1-201ENST00000422953 1114 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AC245028.1-201ENST00000423259 256 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.22□□□□□ -1.73
LIM2P55344 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.22□□□□□ -1.73
LIM2P55344 BTBD7P2-201ENST00000441962 620 ntBASIC4.22□□□□□ -1.73
LIM2P55344 RPS27AP15-201ENST00000447672 466 ntBASIC4.22□□□□□ -1.73
LIM2P55344 RPS27AP17-201ENST00000463344 455 ntBASIC4.22□□□□□ -1.73
LIM2P55344 RPL21P126-201ENST00000470049 478 ntBASIC4.22□□□□□ -1.73
LIM2P55344 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.22□□□□□ -1.73
LIM2P55344 AC037198.2-201ENST00000478845 733 ntBASIC4.22□□□□□ -1.73
LIM2P55344 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.22□□□□□ -1.73
LIM2P55344 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
LIM2P55344 RNA5SP497-201ENST00000516081 97 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AC018442.3-201ENST00000523025 183 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.22□□□□□ -1.73
LIM2P55344 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.22□□□□□ -1.73
LIM2P55344 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.22□□□□□ -1.73
LIM2P55344 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.22□□□□□ -1.73
LIM2P55344 AC019193.2-201ENST00000610012 634 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AC012409.3-201ENST00000611343 981 ntBASIC4.22□□□□□ -1.73
LIM2P55344 MIR6820-201ENST00000611508 62 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AC023509.5-201ENST00000617434 807 ntBASIC4.22□□□□□ -1.73
LIM2P55344 AP003499.2-201ENST00000624100 483 ntBASIC4.22□□□□□ -1.73
LIM2P55344 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
LIM2P55344 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
LIM2P55344 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.22□□□□□ -1.73
LIM2P55344 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIM2P55344 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
LIM2P55344 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
LIM2P55344 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
LIM2P55344 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
LIM2P55344 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
LIM2P55344 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
LIM2P55344 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
LIM2P55344 AL137100.1-201ENST00000556703 1620 ntBASIC4.21□□□□□ -1.73
LIM2P55344 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.21□□□□□ -1.73
LIM2P55344 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIM2P55344 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.21□□□□□ -1.74
LIM2P55344 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.21□□□□□ -1.74
LIM2P55344 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIM2P55344 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.21□□□□□ -1.74
LIM2P55344 AL136131.1-201ENST00000406079 803 ntBASIC4.21□□□□□ -1.74
LIM2P55344 SNRPFP1-201ENST00000414761 252 ntBASIC4.21□□□□□ -1.74
LIM2P55344 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms