Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RN7SKP147-201ENST00000517154 244 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 IGKV2-18-201ENST00000522607 343 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 AC022832.1-201ENST00000530718 645 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXA3P55318 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 CBX3P5-201ENST00000552017 521 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AL110118.1-201ENST00000553543 400 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXA3P55318 AC123786.2-201ENST00000603459 275 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC015982.1-201ENST00000608113 465 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC108467.2-201ENST00000617640 1597 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC112694.2-201ENST00000623697 768 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA3P55318 SNORA17.5-201ENST00000630429 132 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA3P55318 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 AC021146.4-201ENST00000309229 279 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RNA5SP322-201ENST00000363617 119 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RNU1-106P-201ENST00000384382 164 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RNU1-89P-201ENST00000384592 164 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 OR1F12-201ENST00000402365 945 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 MIR1286-201ENST00000408112 78 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA3P55318 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 RPL6P29-201ENST00000414863 865 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 MTND4LP21-201ENST00000415303 295 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 USP12PY-201ENST00000427677 1064 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RN7SL172P-201ENST00000460535 303 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC016687.1-201ENST00000482574 353 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 AC020593.1-201ENST00000507399 299 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA3P55318 RN7SKP66-201ENST00000516681 231 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA3P55318 AP001880.2-201ENST00000538233 448 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA3P55318 MIR3691-201ENST00000578066 90 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC3.22□□□□□ -1.89
FOXA3P55318 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 VN1R79P-201ENST00000593540 513 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC073091.2-201ENST00000603205 907 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 AC064801.1-201ENST00000612025 407 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 EIF3FP1-201ENST00000613970 806 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RN7SL722P-201ENST00000617780 284 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 RN7SL565P-201ENST00000618246 284 ntBASIC3.22□□□□□ -1.89
FOXA3P55318 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA3P55318 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA3P55318 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
FOXA3P55318 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
FOXA3P55318 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC009229.4-201ENST00000623854 1947 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA3P55318 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA3P55318 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA3P55318 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA3P55318 XIAPP3-201ENST00000312918 795 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA3P55318 MIR323A-201ENST00000362199 86 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA3P55318 AL589994.1-201ENST00000404962 340 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 MIR1183-201ENST00000408856 89 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 RN7SKP206-201ENST00000410823 293 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA3P55318 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC011742.1-201ENST00000431448 434 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 LYPLA1P1-201ENST00000434514 622 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 RPL7P28-201ENST00000437739 740 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AF228730.2-201ENST00000438784 848 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 YWHAZP2-201ENST00000440317 728 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 RPL23AP93-201ENST00000440847 484 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AL391987.1-201ENST00000441025 200 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AC092647.3-201ENST00000443044 633 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 RPS27AP17-201ENST00000463344 455 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 RN7SL812P-201ENST00000493791 279 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms