Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 AL133268.1-201ENST00000405676 1401 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.42□□□□□ -1.54
COL18A1P39060 AP000907.1-201ENST00000428428 510 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 FCF1P7-201ENST00000451185 558 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 RPS3AP6-201ENST00000484430 795 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 AC093815.1-201ENST00000508637 280 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.42□□□□□ -1.54
COL18A1P39060 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 AC021242.1-201ENST00000507315 2035 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.42□□□□□ -1.54
COL18A1P39060 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.42□□□□□ -1.54
COL18A1P39060 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL18A1P39060 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
COL18A1P39060 HMGB3P19-201ENST00000403971 560 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 CTSL3P-202ENST00000412179 788 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 AL139247.1-201ENST00000422768 325 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 VTI1BP4-201ENST00000427516 527 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.42□□□□□ -1.54
COL18A1P39060 AL445433.1-201ENST00000457507 257 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 OR9M1P-201ENST00000459641 921 ntBASIC5.42□□□□□ -1.54
COL18A1P39060 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.42□□□□□ -1.54
COL18A1P39060 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.42□□□□□ -1.54
COL18A1P39060 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.42□□□□□ -1.54
COL18A1P39060 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.42□□□□□ -1.54
COL18A1P39060 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.42□□□□□ -1.54
COL18A1P39060 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC5.42□□□□□ -1.54
COL18A1P39060 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.42□□□□□ -1.54
COL18A1P39060 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.41□□□□□ -1.54
COL18A1P39060 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL18A1P39060 SYF2P2-201ENST00000417620 583 ntBASIC5.41□□□□□ -1.54
COL18A1P39060 AC114814.2-201ENST00000419195 485 ntBASIC5.41□□□□□ -1.54
COL18A1P39060 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.41□□□□□ -1.54
COL18A1P39060 RPL23AP25-201ENST00000430973 463 ntBASIC5.41□□□□□ -1.54
COL18A1P39060 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 AL139099.1-201ENST00000497398 403 ntBASIC5.41□□□□□ -1.54
COL18A1P39060 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.41□□□□□ -1.54
COL18A1P39060 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.41□□□□□ -1.54
COL18A1P39060 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.41□□□□□ -1.54
COL18A1P39060 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 AL031658.2-201ENST00000616850 651 ntBASIC5.41□□□□□ -1.54
COL18A1P39060 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.41□□□□□ -1.54
COL18A1P39060 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL18A1P39060 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
COL18A1P39060 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.4□□□□□ -1.54
COL18A1P39060 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.4□□□□□ -1.54
COL18A1P39060 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.4□□□□□ -1.54
COL18A1P39060 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 RN7SKP186-201ENST00000365371 303 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 RNA5SP22-201ENST00000365393 109 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 U1.1-201ENST00000384101 164 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL18A1P39060 AC233289.1-201ENST00000403700 508 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 RPL36AP10-201ENST00000421785 322 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 RPL7P49-201ENST00000471402 708 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 NDUFA5P2-201ENST00000519723 344 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 AC005255.1-201ENST00000593748 216 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 AC243756.2-201ENST00000618406 463 ntBASIC5.4□□□□□ -1.54
COL18A1P39060 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
COL18A1P39060 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL18A1P39060 AL929601.4-201ENST00000613011 1341 ntBASIC5.4□□□□□ -1.55
COL18A1P39060 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL18A1P39060 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL18A1P39060 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.39□□□□□ -1.55
COL18A1P39060 AL353748.1-201ENST00000440753 474 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 SNORA59A-201ENST00000459326 152 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 AC091516.1-201ENST00000549191 703 ntBASIC5.39□□□□□ -1.55
COL18A1P39060 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.39□□□□□ -1.55
COL18A1P39060 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms