Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.85□□□□□ -1.47
SMARCA1P28370 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 AC145350.1-201ENST00000567426 208 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 MTND3P13-201ENST00000574391 343 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AL035411.2-201ENST00000604022 421 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AC096586.1-201ENST00000610267 561 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 FRG1EP-201ENST00000634469 770 ntBASIC5.85□□□□□ -1.47
SMARCA1P28370 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SMARCA1P28370 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.85□□□□□ -1.47
SMARCA1P28370 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.85□□□□□ -1.47
SMARCA1P28370 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMARCA1P28370 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMARCA1P28370 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SMARCA1P28370 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMARCA1P28370 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMARCA1P28370 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.84□□□□□ -1.47
SMARCA1P28370 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
SMARCA1P28370 NF1-214ENST00000490416 1329 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 Y_RNA.472-201ENST00000384322 102 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 SNORD116-12-201ENST00000384468 92 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 U3.32-201ENST00000408116 212 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AL513175.2-201ENST00000422071 443 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC246680.2-201ENST00000422106 389 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC010099.3-201ENST00000423896 409 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 RHOT1P3-201ENST00000436571 331 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 PSMD10P3-201ENST00000437000 448 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AL450023.3-201ENST00000440592 271 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 MRPL35P2-201ENST00000448009 511 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 IGHV5-78-201ENST00000450948 295 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC244505.3-201ENST00000454598 187 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 NDUFA5P9-201ENST00000472609 340 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 RPL7AP10-201ENST00000481016 791 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC008083.2-201ENST00000546707 476 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.84□□□□□ -1.47
SMARCA1P28370 MTND4P33-201ENST00000556706 766 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 MIR4646-201ENST00000580775 63 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC025588.2-201ENST00000604851 466 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC013468.1-201ENST00000608680 598 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.84□□□□□ -1.47
SMARCA1P28370 EIF3FP1-201ENST00000613970 806 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AL121895.2-201ENST00000619558 447 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMARCA1P28370 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.84□□□□□ -1.47
SMARCA1P28370 AC007342.8-201ENST00000623278 678 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 AC024023.1-201ENST00000624530 922 ntBASIC5.84□□□□□ -1.47
SMARCA1P28370 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.84□□□□□ -1.47
SMARCA1P28370 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SMARCA1P28370 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SMARCA1P28370 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.84□□□□□ -1.48
SMARCA1P28370 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
SMARCA1P28370 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SMARCA1P28370 AC012321.1-201ENST00000561622 1588 ntBASIC5.84□□□□□ -1.48
SMARCA1P28370 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SMARCA1P28370 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
SMARCA1P28370 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SMARCA1P28370 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.83□□□□□ -1.48
SMARCA1P28370 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 SNORA74A-201ENST00000364089 198 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AL109941.1-201ENST00000401925 229 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 HMGB3P18-201ENST00000406327 590 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC105402.1-201ENST00000413336 545 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 RPS7P9-201ENST00000414704 586 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC016769.2-201ENST00000414815 475 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.83□□□□□ -1.48
SMARCA1P28370 RPS3AP37-201ENST00000419176 745 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 NPM1P22-201ENST00000427761 952 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AL589880.1-201ENST00000448271 287 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms