Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HLA-DMBP28068 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HLA-DMBP28068 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.4□□□□□ -1.86
HLA-DMBP28068 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.86
HLA-DMBP28068 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 RNU6-1331P-201ENST00000363658 106 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 SNORA71.2-201ENST00000364941 134 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 RNU1-44P-201ENST00000384453 163 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 RNU6-178P-201ENST00000384631 104 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 MIR659-201ENST00000384963 97 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 FAR2P2-201ENST00000413041 594 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 FAR2P4-202ENST00000425399 584 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 CENPIP1-201ENST00000425713 902 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 DYNLL1P7-201ENST00000429273 258 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AL513533.1-201ENST00000453728 415 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC114982.2-201ENST00000461396 358 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 RPL12P20-201ENST00000475538 479 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 MTND4LP2-201ENST00000502312 285 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 MGST2-204ENST00000506797 634 ntTSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 PGBD4P4-201ENST00000509673 613 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 snoU109.6-201ENST00000516831 118 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 VN1R81P-201ENST00000602085 372 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC020634.1-201ENST00000608701 549 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC016252.1-201ENST00000609721 474 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AL138721.1-201ENST00000616756 179 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC015908.5-201ENST00000623289 343 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 AC021106.3-201ENST00000623925 531 ntBASIC3.4□□□□□ -1.87
HLA-DMBP28068 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HLA-DMBP28068 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
HLA-DMBP28068 ZNF137P-201ENST00000456718 1920 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 GLULP6-201ENST00000399502 913 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC004552.1-201ENST00000419089 348 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 RAD23BP1-201ENST00000421404 1227 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC009480.2-201ENST00000422916 432 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 HMGB1P32-201ENST00000425971 565 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC068287.1-201ENST00000430283 295 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 RPEP2-201ENST00000432149 701 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 RPL36AP15-201ENST00000444514 266 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC009220.1-201ENST00000451614 275 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 RPL10P17-201ENST00000453852 316 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 RPS27AP17-201ENST00000463344 455 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 RPS26P3-201ENST00000470205 348 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 RN7SL481P-201ENST00000477764 299 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC090543.2-201ENST00000483963 348 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC004057.1-201ENST00000485827 348 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms