Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 AC005154.2-201ENST00000438110 379 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC016831.4-201ENST00000438302 307 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 RPL10P17-201ENST00000453852 316 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 SCARNA10-201ENST00000459255 330 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 STRADBP1-201ENST00000478954 1281 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 IGBP1P5-201ENST00000507524 1000 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 RNU1-6P-201ENST00000516290 144 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 MORF4L1P3-201ENST00000525966 950 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 AC124856.1-201ENST00000600819 896 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 BNIP3P19-201ENST00000605397 577 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC015813.4-201ENST00000610469 179 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AL121873.1-201ENST00000616013 524 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC009704.2-201ENST00000618739 483 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC021106.3-201ENST00000623925 531 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXD4P09016 AL590396.2-201ENST00000636511 1041 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXD4P09016 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 DDX6P1-205ENST00000441966 1436 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 SMG1P6-201ENST00000532337 2930 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HOXD4P09016 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 AC073508.1-201ENST00000428866 656 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 HSFY7P-201ENST00000432672 318 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXD4P09016 HSFY8P-201ENST00000437934 318 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 CCRL1P1-201ENST00000449542 1053 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 RPL31P20-201ENST00000449593 360 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 HSFY5P-201ENST00000453726 309 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXD4P09016 EIF2S2P4-201ENST00000461070 984 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXD4P09016 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXD4P09016 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXD4P09016 PCNAP1-201ENST00000505363 709 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 RPS27AP18-201ENST00000515536 459 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 RNU6-491P-201ENST00000516099 110 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
HOXD4P09016 AC009643.1-201ENST00000532030 391 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXD4P09016 AP001880.2-201ENST00000538233 448 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXD4P09016 AC116553.2-201ENST00000564203 463 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 SNORA74C-1-201ENST00000580726 201 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 RN7SL690P-201ENST00000582087 240 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 SS18L2P2-201ENST00000583960 235 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AL391001.1-201ENST00000602747 715 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AL121932.1-201ENST00000605542 214 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AL355802.4-201ENST00000607635 548 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AC084824.5-201ENST00000612009 413 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 AP006248.3-201ENST00000623580 594 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HOXD4P09016 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXD4P09016 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 Z98755.1-201ENST00000407015 1384 ntBASIC4.35□□□□□ -1.71
HOXD4P09016 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HOXD4P09016 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXD4P09016 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXD4P09016 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms