Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN9O95484 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.34□□□□□ -1.71
CLDN9O95484 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN9O95484 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN9O95484 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN9O95484 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN9O95484 AC104118.1-201ENST00000607625 1589 ntBASIC4.34□□□□□ -1.71
CLDN9O95484 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN9O95484 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN9O95484 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
CLDN9O95484 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CLDN9O95484 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN9O95484 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 AL450326.2-201ENST00000421913 1962 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC009313.2-201ENST00000417893 1941 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 BX005019.1-201ENST00000561881 1810 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 RNA5SP307-201ENST00000362863 116 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RN7SKP224-201ENST00000364140 325 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN9O95484 RNU6-178P-201ENST00000384631 104 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 GSTA12P-201ENST00000402398 508 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AL133270.1-201ENST00000402635 279 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RN7SKP167-201ENST00000411047 285 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 AC007563.3-201ENST00000433233 371 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 HMGB3P9-201ENST00000441799 583 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RPL23AP43-201ENST00000446445 471 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC010326.1-201ENST00000462726 602 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 PCNAP1-201ENST00000505363 709 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC108471.1-201ENST00000513977 287 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.33□□□□□ -1.72
CLDN9O95484 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 RN7SL52P-201ENST00000584271 284 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 AC068020.1-201ENST00000594215 661 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC087283.1-201ENST00000604029 1074 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC022387.2-201ENST00000604050 448 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AL049539.1-201ENST00000611964 459 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AL138721.1-201ENST00000616756 179 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN9O95484 AC015908.5-201ENST00000623289 343 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC002044.3-201ENST00000623314 541 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 RPL23AP61-201ENST00000623642 466 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AC007546.2-201ENST00000623996 360 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 AL596275.2-204ENST00000641628 552 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 AL596275.2-206ENST00000641957 626 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN9O95484 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN9O95484 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN9O95484 AL592182.3-201ENST00000642132 3304 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.33□□□□□ -1.72
CLDN9O95484 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN9O95484 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
CLDN9O95484 VN2R3P-201ENST00000422626 1412 ntBASIC4.32□□□□□ -1.72
CLDN9O95484 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.32□□□□□ -1.72
CLDN9O95484 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 RNU6-225P-201ENST00000384613 103 ntBASIC4.32□□□□□ -1.72
CLDN9O95484 MIR7-1-201ENST00000384871 110 ntBASIC4.32□□□□□ -1.72
CLDN9O95484 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CLDN9O95484 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN9O95484 AL049697.2-201ENST00000403708 294 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms