Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC006065.6-201ENST00000625201 545 ntBASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC107027.3-201ENST00000565095 3473 ntBASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
TMX2-CTNND1H3BSU7 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 CCT8P1-201ENST00000413611 1657 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 RNA5SP388-201ENST00000362584 119 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 GSTM3P2-201ENST00000412746 530 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 Z74021.1-201ENST00000423610 407 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 MAPRE1P3-201ENST00000435438 796 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC004938.1-201ENST00000438468 308 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 FHP1-201ENST00000442741 703 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 PHBP16-201ENST00000446318 950 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC114755.5-201ENST00000447760 831 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 NUTF2P3-201ENST00000448540 384 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 RPS20P4-201ENST00000461659 355 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 RN7SL98P-201ENST00000462271 300 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC093824.1-201ENST00000508796 343 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 MTCO1P35-201ENST00000515270 228 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 RNU6-964P-201ENST00000516524 69 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AF186190.1-201ENST00000517470 480 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC021733.2-201ENST00000518830 497 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 CYCSP28-201ENST00000534284 321 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 MIR3138-201ENST00000585238 82 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC011477.5-201ENST00000586571 259 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC124856.1-201ENST00000600819 896 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL031119.1-201ENST00000404707 1879 ntBASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.38□□□□□ -1.71
TMX2-CTNND1H3BSU7 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC093535.2-201ENST00000624769 2326 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 HSPD1P14-201ENST00000432666 1618 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 MIR137-201ENST00000385223 102 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 RPL23AP59-201ENST00000399415 461 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 RN7SKP27-201ENST00000410684 333 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 OR51B3P-201ENST00000412287 913 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 RPS12P10-201ENST00000427031 377 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 PARP4P3-201ENST00000510265 317 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 SNORA31.9-201ENST00000516429 84 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC022616.2-201ENST00000523185 300 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 FKBP1BP1-201ENST00000553366 325 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 MTND6P33-201ENST00000571794 183 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC008638.3-201ENST00000603341 463 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC133552.5-201ENST00000604266 540 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC009237.17-201ENST00000618111 748 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC135352.1-201ENST00000506173 1418 ntBASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TMX2-CTNND1H3BSU7 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TMX2-CTNND1H3BSU7 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TMX2-CTNND1H3BSU7 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
TMX2-CTNND1H3BSU7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
TMX2-CTNND1H3BSU7 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms