Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC42Q96M95 RPS26P13-201ENST00000419030 330 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 NPM1P39-201ENST00000449818 867 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 SEPT14P1-201ENST00000458703 648 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC092324.1-201ENST00000468671 324 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 MIR4675-201ENST00000577898 77 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AC064801.1-201ENST00000612025 407 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 MIR7155-201ENST00000615925 56 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL445528.2-201ENST00000620582 470 ntBASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC42Q96M95 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC42Q96M95 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC008033.1-201ENST00000216407 1162 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 RNU6-984P-201ENST00000363236 109 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 JKAMPP1-201ENST00000413804 919 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 BX119904.1-201ENST00000432026 348 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AL359265.2-201ENST00000434367 631 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 RPL7P61-201ENST00000451721 751 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC107015.1-201ENST00000466902 747 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC117394.1-201ENST00000477323 567 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC025554.1-201ENST00000505641 188 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC008147.3-201ENST00000548666 354 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC021483.2-201ENST00000567415 758 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 OR7E18P-201ENST00000592589 702 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC025175.1-201ENST00000606482 759 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC233309.1-201ENST00000619522 751 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC42Q96M95 AC018445.2-201ENST00000622987 260 ntBASIC4.59□□□□□ -1.67
CCDC42Q96M95 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC42Q96M95 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.59□□□□□ -1.68
CCDC42Q96M95 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC42Q96M95 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC42Q96M95 VPS35P1-201ENST00000563400 1518 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 RARSP1-201ENST00000542842 1418 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 RNA5SP513-201ENST00000364648 118 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 RNA5SP87-201ENST00000384155 118 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 EIF4A1P3-201ENST00000411521 244 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 GSTA7P-201ENST00000438425 448 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 AL357520.1-201ENST00000441557 453 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 RN7SL329P-201ENST00000467740 299 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 RPL21P126-201ENST00000470049 478 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 AC083829.1-201ENST00000503756 657 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 BNIP3P41-201ENST00000503774 571 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 AC139783.2-201ENST00000504847 1145 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC42Q96M95 NOL8P1-201ENST00000508336 3529 ntBASIC4.58□□□□□ -1.68
CCDC42Q96M95 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC42Q96M95 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC42Q96M95 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC42Q96M95 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC42Q96M95 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms