Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC109780.1-201ENST00000451768 1344 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS39Q96JC1 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 NCLP2-201ENST00000416078 1462 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS39Q96JC1 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 OR10J6P-201ENST00000289731 930 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 OR56B2P-201ENST00000317102 954 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS39Q96JC1 RNU6-185P-201ENST00000384421 107 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 MIR921-201ENST00000401133 56 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 SPTLC1P2-201ENST00000407089 121 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 OR51B3P-201ENST00000412287 913 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 VDAC1P9-201ENST00000412766 841 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AL450992.3-201ENST00000413192 568 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC105402.1-201ENST00000413336 545 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 RPS24P8-201ENST00000431490 402 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 TRY2P-201ENST00000448860 689 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 MORF4L1P4-201ENST00000450245 976 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC079168.2-201ENST00000453977 416 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC008638.1-201ENST00000506035 866 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 AL049870.4-201ENST00000555741 486 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC209154.1-201ENST00000582156 337 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC011477.5-201ENST00000586571 259 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 MIR7973-1-201ENST00000614683 76 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC015726.3-201ENST00000624501 418 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AL596275.2-204ENST00000641628 552 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AL596275.2-206ENST00000641957 626 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS39Q96JC1 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS39Q96JC1 SAMMSON-226ENST00000642089 1582 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC006971.1-201ENST00000407916 4486 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 AC108751.5-201ENST00000492880 1336 ntBASIC4.69□□□□□ -1.66
VPS39Q96JC1 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 MIR105-2-201ENST00000385083 81 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AL589647.1-201ENST00000402485 466 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 RPS20P25-201ENST00000412447 352 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 RPL30P3-201ENST00000424262 333 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 NDUFS5P3-201ENST00000450668 321 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC090142.1-201ENST00000465776 462 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 OR52A4P-203ENST00000498233 1014 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 EDDM3DP-201ENST00000554692 434 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 MIR548Y-201ENST00000582739 110 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 HMGB2P1-201ENST00000591146 634 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC073137.1-201ENST00000605636 634 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC073111.2-201ENST00000605657 1075 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC140113.4-201ENST00000622087 222 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 AC018445.2-201ENST00000622987 260 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 AL442639.1-201ENST00000625030 1899 ntBASIC4.68□□□□□ -1.66
VPS39Q96JC1 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS39Q96JC1 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS39Q96JC1 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms