Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR3611-201ENST00000584484 83 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC107982.3-201ENST00000584957 985 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC060780.2-201ENST00000589047 198 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC073137.1-201ENST00000605636 634 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC012409.3-201ENST00000611343 981 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC024941.1-201ENST00000612250 334 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AF246928.1-201ENST00000623768 87 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USP39Q53GS9 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC239868.2-201ENST00000564237 4527 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.68□□□□□ -1.5
USP39Q53GS9 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 ZNF733P-202ENST00000444809 1573 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
USP39Q53GS9 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AC138907.8-201ENST00000623981 2256 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
USP39Q53GS9 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
USP39Q53GS9 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP39Q53GS9 Y_RNA.88-201ENST00000363029 99 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 U6.112-201ENST00000384129 70 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 MIR765-201ENST00000390226 114 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AL645733.1-201ENST00000402250 217 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 RN7SKP216-201ENST00000411050 312 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 RPL37P18-201ENST00000411602 243 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 USP9YP33-201ENST00000412220 421 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 OR8G2P-201ENST00000412796 908 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 METTL15P3-201ENST00000415522 1221 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 NENFP1-201ENST00000419476 466 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 CENPIP1-201ENST00000425713 902 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 HIGD1AP12-201ENST00000427832 281 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AL096803.2-201ENST00000450032 677 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC233982.1-201ENST00000451247 436 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 MRPL42P4-201ENST00000453267 443 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AC027673.1-201ENST00000456245 405 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 RPS23P2-201ENST00000463671 415 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC079080.1-201ENST00000479841 822 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 OR5H4P-201ENST00000510851 923 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AC022832.1-201ENST00000530718 645 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 OR8G3P-201ENST00000533406 921 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC126615.2-201ENST00000553003 515 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AL358913.1-201ENST00000554342 121 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AC087465.1-201ENST00000560574 245 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC074051.3-201ENST00000570238 358 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 RN7SL708P-201ENST00000580952 299 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.67□□□□□ -1.5
USP39Q53GS9 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.67□□□□□ -1.5
USP39Q53GS9 AC012616.1-201ENST00000600294 197 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC025857.2-201ENST00000602711 238 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC005377.1-201ENST00000605126 456 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AL445222.1-201ENST00000607259 628 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC009237.15-201ENST00000610252 501 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 Z95327.3-201ENST00000610385 572 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC090510.2-201ENST00000617465 629 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC009509.4-201ENST00000619202 509 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC009878.1-201ENST00000621819 340 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 AC019080.5-201ENST00000624891 757 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP39Q53GS9 MFSD8-219ENST00000641228 2559 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms