Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RN7SKP159-201ENST00000410657 292 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AF213884.1-201ENST00000488102 463 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 BNIP3P11-201ENST00000603878 563 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 BNIP3P19-201ENST00000605397 577 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 AL121839.2-201ENST00000565058 6943 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 RN7SKP74-201ENST00000362849 309 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 AL590704.1-201ENST00000402856 794 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 CYCSP10-201ENST00000417973 294 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 RNA5SP246-201ENST00000458909 119 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 RPS20P4-201ENST00000461659 355 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 PARP4P3-201ENST00000510265 317 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 HMGB2P1-201ENST00000591146 634 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 Z98200.1-201ENST00000607298 470 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 MAPK10-372ENST00000641954 3413 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 AC139769.1-204ENST00000472297 1931 ntBASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC88AQ3V6T2 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 MIR7-3-201ENST00000384898 110 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 MIR921-201ENST00000401133 56 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AL592291.1-201ENST00000403830 352 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AL450992.3-201ENST00000413192 568 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 RN7SL812P-201ENST00000493791 279 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC007991.1-201ENST00000522680 631 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC007546.2-201ENST00000623996 360 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 SNORA5A-201ENST00000384111 134 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC091286.1-201ENST00000431233 461 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AL035246.1-201ENST00000433554 1255 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 RN7SKP141-201ENST00000516167 338 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 SRGNP1-201ENST00000603392 451 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 AP001002.1-201ENST00000625148 1513 ntBASIC5.28□□□□□ -1.56
CCDC88AQ3V6T2 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 NXPH1-205ENST00000602349 1953 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 OR11H4-201ENST00000315409 1082 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 RNU1-83P-201ENST00000363426 164 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 BOLA3P4-201ENST00000418151 400 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 RPL36AP10-201ENST00000421785 322 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 OR8F1P-201ENST00000425243 930 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AC010374.1-201ENST00000503762 1237 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AC110768.1-201ENST00000509222 400 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 IGKV2D-19-201ENST00000523346 262 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AC112230.1-201ENST00000604342 547 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms