Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MRPL49P2-201ENST00000521066 465 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AP000859.1-201ENST00000525536 307 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AC084759.1-201ENST00000561168 290 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 MIR4286-201ENST00000580651 93 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC3.92□□□□□ -1.78
CHD3Q12873 AC090948.1-201ENST00000607464 549 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AL121890.2-201ENST00000617644 465 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AC234782.5-201ENST00000617723 324 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 OR2L1P-202ENST00000641567 1023 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CHD3Q12873 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
CHD3Q12873 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CHD3Q12873 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.91□□□□□ -1.78
CHD3Q12873 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CHD3Q12873 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 AC011933.1-201ENST00000413334 321 ntBASIC3.91□□□□□ -1.78
CHD3Q12873 SETP10-201ENST00000424368 814 ntBASIC3.91□□□□□ -1.78
CHD3Q12873 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 AC116533.1-201ENST00000459748 321 ntBASIC3.91□□□□□ -1.78
CHD3Q12873 RPL36AP41-201ENST00000493820 306 ntBASIC3.91□□□□□ -1.78
CHD3Q12873 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.91□□□□□ -1.78
CHD3Q12873 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC3.91□□□□□ -1.78
CHD3Q12873 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.91□□□□□ -1.78
CHD3Q12873 CDC27P2-201ENST00000425026 1922 ntBASIC3.91□□□□□ -1.78
CHD3Q12873 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.91□□□□□ -1.78
CHD3Q12873 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHD3Q12873 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 MIR383-201ENST00000362257 73 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AL022722.2-201ENST00000402519 180 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 GAPDHP49-201ENST00000421421 961 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.9□□□□□ -1.78
CHD3Q12873 RPEP3-201ENST00000425462 676 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.9□□□□□ -1.78
CHD3Q12873 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.9□□□□□ -1.78
CHD3Q12873 AL132765.1-201ENST00000434165 553 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 OR4C10P-201ENST00000434991 931 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 RPL21P126-201ENST00000470049 478 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AF186190.1-201ENST00000517470 480 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CHD3Q12873 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 OR14L1P-202ENST00000641545 3009 ntBASIC3.9□□□□□ -1.78
CHD3Q12873 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CHD3Q12873 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.9□□□□□ -1.79
CHD3Q12873 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.9□□□□□ -1.79
CHD3Q12873 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CHD3Q12873 GLS-204ENST00000409428 816 ntTSL 2 BASIC3.9□□□□□ -1.79
CHD3Q12873 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC3.9□□□□□ -1.79
CHD3Q12873 AL031584.1-201ENST00000447169 754 ntBASIC3.9□□□□□ -1.79
CHD3Q12873 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.9□□□□□ -1.79
CHD3Q12873 AC113430.1-201ENST00000506872 718 ntBASIC3.9□□□□□ -1.79
CHD3Q12873 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.9□□□□□ -1.79
CHD3Q12873 RNA5SP446-201ENST00000515955 82 ntBASIC3.9□□□□□ -1.79
CHD3Q12873 AC053481.3-201ENST00000577881 843 ntBASIC3.9□□□□□ -1.79
CHD3Q12873 AL008729.2-201ENST00000606393 473 ntBASIC3.9□□□□□ -1.79
CHD3Q12873 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.9□□□□□ -1.79
CHD3Q12873 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CHD3Q12873 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CHD3Q12873 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.89□□□□□ -1.79
CHD3Q12873 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CHD3Q12873 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CHD3Q12873 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.89□□□□□ -1.79
CHD3Q12873 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
CHD3Q12873 RNU6-761P-201ENST00000384148 107 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 RPS26P8-201ENST00000393490 348 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 CYCSP19-201ENST00000411715 316 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 CASKP1-201ENST00000412870 582 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 AC140479.3-201ENST00000418944 1126 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 RPL7AP25-201ENST00000423357 805 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 RPL23AP43-201ENST00000446445 471 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.89□□□□□ -1.79
CHD3Q12873 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms