Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01739-205ENST00000641890 573 ntBASIC3.25□□□□□ -1.89
FOXA3P55318 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA3P55318 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
FOXA3P55318 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA3P55318 AC007529.1-201ENST00000418574 2178 ntBASIC3.25□□□□□ -1.89
FOXA3P55318 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA3P55318 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA3P55318 ZNF137P-201ENST00000456718 1920 ntBASIC3.25□□□□□ -1.89
FOXA3P55318 A2MP1-204ENST00000566278 4130 ntBASIC3.25□□□□□ -1.89
FOXA3P55318 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA3P55318 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 CUL4AP1-201ENST00000514750 1863 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA3P55318 RN7SKP95-201ENST00000362860 303 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 SNORD66.1-201ENST00000391230 76 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 GLULP6-201ENST00000399502 913 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 CHEK2P3-201ENST00000416118 248 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA3P55318 AC007559.1-201ENST00000428736 355 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AL049745.1-201ENST00000433953 286 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AL132765.1-201ENST00000434165 553 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA3P55318 RPL23AP43-201ENST00000446445 471 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA3P55318 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 snoU13.20-201ENST00000459180 104 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 RPL21P71-201ENST00000465598 459 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AC105918.1-201ENST00000474399 838 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AC108145.1-201ENST00000503770 153 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.24□□□□□ -1.89
FOXA3P55318 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA3P55318 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA3P55318 AL121839.1-201ENST00000556233 1185 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.24□□□□□ -1.89
FOXA3P55318 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 AP003392.5-201ENST00000607857 415 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 MIR6891-201ENST00000618788 93 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AC008115.4-201ENST00000619780 775 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 AC006065.6-201ENST00000625201 545 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.24□□□□□ -1.89
FOXA3P55318 OR2L1P-202ENST00000641567 1023 ntBASIC3.24□□□□□ -1.89
FOXA3P55318 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA3P55318 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA3P55318 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 AC006971.1-201ENST00000407916 4486 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 AL627171.1-201ENST00000618845 1308 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 FAM35DP-201ENST00000323387 2712 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA3P55318 FAM3C2-201ENST00000312214 681 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 RNA5SP191-201ENST00000362585 102 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 RNU6-146P-201ENST00000384602 108 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 MIR621-201ENST00000384919 96 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 SNORA17A-201ENST00000391185 133 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 RPS20P14-201ENST00000412545 360 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 RSU1P3-201ENST00000412878 835 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXA3P55318 AL161631.1-201ENST00000417933 486 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA3P55318 RPL12P34-201ENST00000424532 479 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 RPS12P10-201ENST00000427031 377 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA3P55318 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA3P55318 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 MARK2P15-201ENST00000432204 2186 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 NRBF2P3-201ENST00000432731 865 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 PSMD10P3-201ENST00000437000 448 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 RPL23AP89-201ENST00000439324 255 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 UBE2V1P3-201ENST00000439651 417 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 AC114495.1-201ENST00000441274 436 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 YWHAQP9-201ENST00000445891 512 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 CLIC4P1-201ENST00000453177 535 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AL354710.1-201ENST00000453641 246 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 RAD23BP3-201ENST00000454157 1152 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA3P55318 AC079841.1-201ENST00000481228 950 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 AC092045.1-201ENST00000495716 1231 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 BNIP3P41-201ENST00000503774 571 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA3P55318 BTF3P13-201ENST00000513224 490 ntBASIC3.23□□□□□ -1.89
FOXA3P55318 MIR2114-201ENST00000516645 80 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms