Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CUX1P39880 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CUX1P39880 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC6.99□□□□□ -1.29
CUX1P39880 AC068533.1-201ENST00000418542 415 ntBASIC6.99□□□□□ -1.29
CUX1P39880 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC6.99□□□□□ -1.29
CUX1P39880 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC6.99□□□□□ -1.29
CUX1P39880 RPL38P1-201ENST00000460914 211 ntBASIC6.99□□□□□ -1.29
CUX1P39880 ACTR3P3-201ENST00000480448 893 ntBASIC6.99□□□□□ -1.29
CUX1P39880 GAPDHP36-201ENST00000480688 918 ntBASIC6.99□□□□□ -1.29
CUX1P39880 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC6.99□□□□□ -1.29
CUX1P39880 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CUX1P39880 AC027455.1-201ENST00000574104 594 ntBASIC6.99□□□□□ -1.29
CUX1P39880 AC007179.3-201ENST00000604976 235 ntBASIC6.99□□□□□ -1.29
CUX1P39880 AC012314.7-201ENST00000619693 93 ntBASIC6.99□□□□□ -1.29
CUX1P39880 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CUX1P39880 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CUX1P39880 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.99□□□□□ -1.29
CUX1P39880 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC6.99□□□□□ -1.29
CUX1P39880 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC6.99□□□□□ -1.29
CUX1P39880 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.98□□□□□ -1.29
CUX1P39880 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 OR4A15-201ENST00000314706 1035 ntBASIC6.98□□□□□ -1.29
CUX1P39880 SNORA5A-201ENST00000384111 134 ntBASIC6.98□□□□□ -1.29
CUX1P39880 RNU1-44P-201ENST00000384453 163 ntBASIC6.98□□□□□ -1.29
CUX1P39880 MIR1179-201ENST00000408703 91 ntBASIC6.98□□□□□ -1.29
CUX1P39880 EIF1P3-201ENST00000423841 334 ntBASIC6.98□□□□□ -1.29
CUX1P39880 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.98□□□□□ -1.29
CUX1P39880 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC6.98□□□□□ -1.29
CUX1P39880 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC6.98□□□□□ -1.29
CUX1P39880 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.98□□□□□ -1.29
CUX1P39880 BNIP3P41-201ENST00000503774 571 ntBASIC6.98□□□□□ -1.29
CUX1P39880 AL359219.2-201ENST00000555184 348 ntBASIC6.98□□□□□ -1.29
CUX1P39880 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC6.98□□□□□ -1.29
CUX1P39880 AC010487.1-201ENST00000594408 1172 ntBASIC6.98□□□□□ -1.29
CUX1P39880 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.98□□□□□ -1.29
CUX1P39880 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CUX1P39880 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.97□□□□□ -1.29
CUX1P39880 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.97□□□□□ -1.29
CUX1P39880 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 SNORD66.1-201ENST00000391230 76 ntBASIC6.97□□□□□ -1.29
CUX1P39880 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 OR5BE1P-201ENST00000425977 939 ntBASIC6.97□□□□□ -1.29
CUX1P39880 GTF3AP5-201ENST00000442645 697 ntBASIC6.97□□□□□ -1.29
CUX1P39880 AC108751.2-201ENST00000469993 231 ntBASIC6.97□□□□□ -1.29
CUX1P39880 AC006499.6-201ENST00000511169 607 ntBASIC6.97□□□□□ -1.29
CUX1P39880 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC6.97□□□□□ -1.29
CUX1P39880 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.97□□□□□ -1.29
CUX1P39880 AL121834.1-201ENST00000572284 509 ntBASIC6.97□□□□□ -1.29
CUX1P39880 AC110743.1-201ENST00000584870 478 ntBASIC6.97□□□□□ -1.29
CUX1P39880 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC6.97□□□□□ -1.29
CUX1P39880 OR5BE1P-202ENST00000641168 1176 ntBASIC6.97□□□□□ -1.29
CUX1P39880 SUPT16HP1-201ENST00000537175 3133 ntBASIC6.97□□□□□ -1.29
CUX1P39880 PCAT14-202ENST00000627127 3935 ntBASIC6.97□□□□□ -1.29
CUX1P39880 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC6.97□□□□□ -1.29
CUX1P39880 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
CUX1P39880 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC6.97□□□□□ -1.29
CUX1P39880 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CUX1P39880 AL139039.2-201ENST00000407436 479 ntBASIC6.96□□□□□ -1.29
CUX1P39880 OR2AH1P-201ENST00000425717 928 ntBASIC6.96□□□□□ -1.29
CUX1P39880 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.96□□□□□ -1.29
CUX1P39880 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
CUX1P39880 AC110768.1-201ENST00000509222 400 ntBASIC6.96□□□□□ -1.29
CUX1P39880 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.96□□□□□ -1.29
CUX1P39880 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC6.96□□□□□ -1.29
CUX1P39880 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.96□□□□□ -1.29
CUX1P39880 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC6.96□□□□□ -1.29
CUX1P39880 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
CUX1P39880 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CUX1P39880 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.96□□□□□ -1.3
CUX1P39880 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CUX1P39880 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
CUX1P39880 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CUX1P39880 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.96□□□□□ -1.3
CUX1P39880 RNU6-525P-201ENST00000363685 104 ntBASIC6.96□□□□□ -1.3
CUX1P39880 AL050321.1-201ENST00000432363 400 ntBASIC6.96□□□□□ -1.3
CUX1P39880 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC6.96□□□□□ -1.3
CUX1P39880 ABCF2P2-201ENST00000450549 296 ntBASIC6.96□□□□□ -1.3
CUX1P39880 RPL36AP13-201ENST00000457490 317 ntBASIC6.96□□□□□ -1.3
CUX1P39880 RPL5P12-201ENST00000477071 851 ntBASIC6.96□□□□□ -1.3
CUX1P39880 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CUX1P39880 HPRT1P2-201ENST00000505250 544 ntBASIC6.96□□□□□ -1.3
CUX1P39880 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.96□□□□□ -1.3
CUX1P39880 MIR6868-201ENST00000611215 58 ntBASIC6.96□□□□□ -1.3
CUX1P39880 AL357559.1-201ENST00000622228 274 ntBASIC6.96□□□□□ -1.3
CUX1P39880 AC091953.5-201ENST00000622919 233 ntBASIC6.96□□□□□ -1.3
CUX1P39880 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
CUX1P39880 ZNF285B-201ENST00000561698 1767 ntBASIC6.95□□□□□ -1.3
CUX1P39880 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.95□□□□□ -1.3
CUX1P39880 AC006042.3-201ENST00000454684 1469 ntBASIC6.95□□□□□ -1.3
CUX1P39880 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.95□□□□□ -1.3
CUX1P39880 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms